New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3513089 =	44 (0.610)	3 (0.040)	3/254	NT	7.1%	coding (1757/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	3513127 =	37 (0.550)					coding (1795/4158 nt)	PP_3108	rhs family protein

CTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAGGGCATCGAATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCGCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3513243‑3513089 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgccGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGC  >  NC_002947/3513127‑3513270                                                                                                                                                                                                                                                                                                             CTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGGCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAGGGCATCGAATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCG                                                                                                                                                        <  7:256133/149‑1    GGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAGGGCATCGAATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCGCTC                                                                                                                                                     >  1:143457/1‑149    GGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAGGGCATCGAATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCGCTC                                                                                                                                                     <  5:195085/149‑1     GCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAGGGCATCGAATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCGCTCG                                                                                                                                                    >  7:399064/1‑149       CAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAGGGCATCGAATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCGCTCGCC                                                                                                                                                  <  1:94149/149‑1                     ACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAGGGCATCGAATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCG                                                                                                                                                        <  4:355346/129‑1                     ACAGGTACTTGGACTTGTAGGTAGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAGGGCATCGAATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCG                                                                                                                                                        >  3:355346/1‑129                                                                                                                 AATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGG                                            >  1:63036/1‑145                                                                                                                 AATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGG                                            <  2:63036/145‑1                                                                                                                  ATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACAC                                       >  7:387293/1‑149                                                                                                                                                      CTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGG    <  8:230572/148‑1                                                                                                                                                      CTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCG     <  7:37392/147‑1                                                                                                                                                          CCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGC  >  5:174359/1‑146                                                                                                                                                                                                                                                                                                             CTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAGGGCATCGAATTCGGCGAGCAGGTTGCCCTTGTCGTCGAAACGCGCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3513243‑3513089 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgccGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGC  >  NC_002947/3513127‑3513270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.