New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3513089 =	44 (0.610)	3 (0.040)	3/254	NT	7.1%	coding (1757/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	3513127 =	37 (0.550)					coding (1795/4158 nt)	PP_3108	rhs family protein

TCTCCCGCCTGCTCGAAGAGACCGACCCGCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGC  >  NC_002947/3512981‑3513270                                                                                                                                                   |                                                                                                                                                 tctcCCGCCTGCTCGAAGAGACCGACCCGCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGaa                                                                                                                                                >  8:399064/1‑149 (MQ=255)  gtgttccaccacaggtacttggacttgtaggtcgcatcgatgatggtgtgcggcaggccgtcatcgctgttcaggtactcggtcatctggccgagggcatcgaattcGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAAt                                                                                                                                               >  7:387293‑M1/108‑149 (MQ=255)  ctcCCGCCTGCTCGAAGAGACCGACCCGCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGaa                                                                                                                                                <  7:342511/148‑1 (MQ=255)       ccaccacaggtacttggacttgtaggtcgcatcgatgatggtgtgcggcaggccgtcatcgctgttcaggtactcggtcatctggccgagggcatcgaattcGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAAtt                                                                                                                                              >  1:63036‑M1/103‑145 (MQ=255)       ccaccacaggtacttggacttgtaggtcgcatcgatgatggtgtgcggcaggccgtcatcgctgttcaggtactcggtcatctggccgagggcatcgaattcGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAAtt                                                                                                                                              <  2:63036‑M1/43‑1 (MQ=255)           gCTCGAAGAGACCGACCCGCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATACGATGccc                                                                                                                                      >  2:235574/1‑149 (MQ=255)               gAAGAGACCGACCCGCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTGAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTc                                                                                                                                    <  8:126204/147‑1 (MQ=255)                    gaccgaccCGCTGGGCCGCAACACCCAGAAAGAATATCACCACCTTACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCTAATTCGATTCCCTCGGCCAGa                                                                                                                             <  4:287463/149‑1 (MQ=17)                         accCGCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGAcc                                                                                                                        <  5:418221/149‑1 (MQ=255)                         accCGCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGAcc                                                                                                                        <  6:435855/149‑1 (MQ=255)                          cccGCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATACGATGCCCTCGGCCAGATGACCg                                                                                                                       <  1:235574/149‑1 (MQ=255)                             gCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGt                                                                                                                    <  8:59365/149‑1 (MQ=255)                             gCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGt                                                                                                                    <  5:216163/149‑1 (MQ=255)                                    cGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGaa                                                                                                             <  4:365622/149‑1 (MQ=255)                                           cccAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGAt                                                                                                      <  1:328065/149‑1 (MQ=255)                                               gTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACg                                                                                                  >  6:314283/1‑149 (MQ=255)                                                 aCGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCTACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑c                                                                                               >  6:425872/1‑149 (MQ=255)                                                   gAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCt                                                                                             >  1:79822/1‑149 (MQ=255)                                                          accaccTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑c                                                                                               <  2:199308/140‑1 (MQ=255)                                                          accaccTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑c                                                                                               >  1:199308/1‑140 (MQ=255)                                                              ccTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACca                                                                                  <  7:96731/149‑1 (MQ=255)                                                               cTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACcat                                                                                 <  6:72666/149‑1 (MQ=255)                                                               cTGACCACACAGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCGGCGAGCCGAATTCGATGCCCACGGCCAGATGCCCGAGTACCAGAACAGCGATGACGG‑CCAGCCGCACCCca                                                                                  >  8:226494/1‑148 (MQ=14)                                                                    cacaCTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTATCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCatcatc                                                                             >  1:371697/1‑148 (MQ=255)                                                                      cacTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGa                                                                           >  8:193371/1‑148 (MQ=40)                                                                           gTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCGGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGa                                                                      <  5:203774/148‑1 (MQ=255)                                                                                ccAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTAc                                                                 >  1:167717/1‑148 (MQ=37)                                                                                         cTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCCTGCCGCACACCATCATCGATGCGACCCACAAGt                                                             <  1:65749/144‑1 (MQ=255)                                                                                         cTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAg                                                        >  4:21667/1‑148 (MQ=37)                                                                                         cTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCCACAAGt                                                             >  2:65749/1‑143 (MQ=37)                                                                                                     cagcaCTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGtggtgg                                            >  2:143457/1‑148 (MQ=37)                                                                                                      agcaCTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCTAGTACCTGTGGTGGa                                           <  7:193371/148‑1 (MQ=37)                                                                                                      agcaCTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGa                                           >  7:230572/1‑148 (MQ=37)                                                                                                        caCTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAaca                                        <  7:411369/149‑1 (MQ=37)                                                                                                        aattcggcgagcaggttgcccttgtcgtcgaaacgcgctcgccGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGtggtgg                                            >  1:63036‑M2/44‑145 (MQ=255)                                                                                                        aattcggcgagcaggttgcccttgtcgtcgaaacgcgctcgccGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGtggtgg                                            <  2:63036‑M2/102‑1 (MQ=255)                                                                                                         attcggcgagcaggttgcccttgtcgtcgaaacgcgctcgccGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAacac                                       >  7:387293‑M2/43‑149 (MQ=255)                                                                                                             GGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTg                                   <  1:94149‑M1/149‑1 (MQ=255)                                                                                                               CGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGc                                 >  7:399064‑M1/1‑149 (MQ=255)                                                                                                                GAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGcc                                <  5:195085‑M1/149‑1 (MQ=255)                                                                                                                GAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGcc                                >  1:143457‑M1/1‑149 (MQ=255)                                                                                                                   CGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGCCGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAg                             <  7:256133‑M1/149‑1 (MQ=255)                                                                                                                   CGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCTACCTACAAGTCCAAGTACCtgt                                                 >  3:355346‑M1/1‑129 (MQ=255)                                                                                                                   CGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCtgt                                                 <  4:355346‑M1/129‑1 (MQ=255)                                                                                                                    gcgTTTCGACGACAAGGGCATCCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGCCCGAGGACCTGAACAGCGATGCGGG‑CCTGCCGCACACCAGCTTCGATGCGCCGTACAAGTCCAAGTAGCGGTGGGGGAACACGCGGGCCCAgg                            >  6:431509/1‑149 (MQ=11)                                                                                                                       tttCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATAGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTc                          >  2:416679/1‑148 (MQ=17)                                                                                                                         tCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGa                        <  4:163719/148‑1 (MQ=11)                                                                                                                          cgacgaCAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAg                       <  8:256133/148‑1 (MQ=11)                                                                                                                             cgacAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAgcagt                   >  7:137866/1‑146 (MQ=14)                                                                                                                                cAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTAcc                <  3:21667/149‑1 (MQ=33)                                                                                                                                  aGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAg              <  1:195640/149‑1 (MQ=34)                                                                                                                                     gCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGa            <  5:314283/148‑1 (MQ=34)                                                                                                                                          cTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTc      >  6:92136/1‑149 (MQ=34)                                                                                                                                             ctcgccGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCgg    <  8:230572‑M2/142‑1 (MQ=255)                                                                                                                                             ctcgccGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCg     <  7:37392‑M2/141‑1 (MQ=255)                                                                                                                                                 ccGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGc  >  5:174359‑M2/3‑146 (MQ=255)                                                                                                                                                   |                                                                                                                                                 TCTCCCGCCTGCTCGAAGAGACCGACCCGCTGGGCCGCAAGACCCAGTACGAATATCACCACCTGACCACACTGGTGACCCAGGTCAGCTACCCGGATGGCAGCACTTGGCGAGCGCGTTTCGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGG‑CCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAGCGCTACCAGGACTGCTCGGGC  >  NC_002947/3512981‑3513270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.