| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3606473 = | 64 (0.890) | 4 (0.060) | 4/258 | NT | 6.2% | coding (289/951 nt) | PP_3181 | site‑specific recombinase |
| ? | NC_002947 | 3606514 = | 60 (0.870) | coding (248/951 nt) | PP_3181 | site‑specific recombinase | |||||
GTGCGTCAGGTGCTACGCGGCATCCGCACCCTGCACCCGACG‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3606515‑3606473‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacg‑cACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCGTGATCGGCCAGGTAGCGGGCGATACTCTCGGCGGTGGCCGGGAGA > NC_002947/3606514‑3606660 GTGCGTCAGGTGCTACGCGGCATCCGCACCCTGCACCCGACGCCACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCGTGA > 8:126591/1‑149 TGCGTCAGGTGCTACGCGGCATCCGCACCCTGCACCCGACG‑CACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCGTGATC > 3:371701/1‑149 GCGTCAGGTGCTACGCGGCATCCGCACCCTGCACCCGACG‑CACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCG < 1:57921/143‑1 GCGTCAGGTGCTACGCGGCATCCGCACCCTGCACCCGACG‑CACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCG > 2:57921/1‑143 CCGACG‑CACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCGTGATCGGCCAGGTAGCGGGCGATACTCTCGGCGGTGGCCG < 4:371701/149‑1 gacgcCACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCGTGATCGGCCAGGTAGCGGGCGATACTCTCGGCGGTGGCCGG < 7:126591/144‑1 GACG‑CACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGAC < 3:310809/91‑1 GACG‑CACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGAC > 4:310809/1‑91 ACG‑CACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGTGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCGTGATCGGCCAGGTAGCGGGCGATACTCTCGGCGGTGGCCGGG < 4:108579/148‑1 ACG‑CACCAATGGCGCCGTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCGTGATCGGCCAGGTAGCGGGCGATACTCTCGGCGGTGGCCGG < 6:369008/147‑1 G‑CACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCGTGATCGGCCAGGTAGCGGGCGATACTCTCGGCGGTGGCCGGGccg > 2:163861/1‑146 G‑CACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCGTGATCGGCCAGGTAGCGGGCGATACTCTCGGCGGTGGCCGGGAGA < 8:334223/149‑1 GTGCGTCAGGTGCTACGCGGCATCCGCACCCTGCACCCGACG‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3606515‑3606473‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacg‑cACCAATGGCGCCTTGGTCGGATCGGGGAAGCCTTGGGCGACGTGCCACTGGCTGAGCGCGGCCAGGCGTTGGCGCAGGGTACTGACTGCATGCTGGTCGGCGTGATCGGCCAGGTAGCGGGCGATACTCTCGGCGGTGGCCGGGAGA > NC_002947/3606514‑3606660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |