| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3799827 = | 70 (0.980) | 4 (0.060) | 4/252 | NT | 6.4% | coding (162/1125 nt) | PP_3360 | membrane protein |
| ? | NC_002947 | 3799911 = | 51 (0.760) | coding (246/1125 nt) | PP_3360 | membrane protein | |||||
GCAAGGCCGCGACCACGAACCACAGGCTGCTGACCCTGGTCAGCCAGCGCTCGGGCAGGTCGAGCATGCTCAGGCCCACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGTGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3799981‑3799827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggcctGAGCATGCTCGACCTGCCCGAGCGCTGGCTGACCAGGGTCAGCAGCCTGTGGTTCGTGGTCGCGGCCTTGC > NC_002947/3799911‑3799981 GCAAGGCCGCGACCACGAACCACAGGCTGCTGACCCTGGTCAGCCAGCGCTCGGGCAGGTCGAGCATGCTCAGGCCCACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGT > 2:159764/1‑149GCAAGGCCGCGACCACGAACCACAGGCTGCTGACCCTGGTCAGCCAGCGCTCGGGCAGGTCGAGCATGCTCAGGCCCACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGT > 2:287692/1‑149GCAAGGCCGCGACCACGAACCACAGGCTGCTGACCCTGGTCAGCCAGCGCTCGGGCAGGTCGAGCATGCTCAGGCCCACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGT > 4:251233/1‑149 AAGGCCGCGACCACGAACCACAGGCTGCTGACCCTGGTCAGCCAGCGCTCGGGCAGGTCGAGCATGCTCAGGCCCACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGTGG > 1:225767/1‑149 AAGGCCGCGACCACGAACCACAGGCTGCTGACCCTGGTCAGCCAGCGCTCGGGCAGGTCGAGCATGCTCAGGCCCACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGTGG < 1:263050/149‑1 GCTCAGGCCCACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGTGGGCCTGAGCATGCTCGACCTGCCCGAGCGCTGGCTGACCAGGGTCAGCAGCCTGTGGTTCGTGGTC > 7:289988/1‑149 CAGGCCCACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGTGGGCCTGAGCATGCTCGACCTGCCCGAGCGCTGGCTGACCAGGGTCAGCAGCCTGTGGTTCGTGGTCGCG > 4:99152/1‑149 CCCACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGTGGGCCTGAGCATGCTCGACCTGCCCGAGCGCTGGCTGACCAGGGTCAGCAGCCTGTGGTTCGTGGTCGCGGCCT < 8:289988/149‑1 ACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGTGGGCCTGAGCATGCTCGACCTGCCCGAGCGCTGGCTGACCAGGGTCAGCAGCCTGTGGTTCGTGGTCGCGGCCTTGC < 3:99152/149‑1 GCAAGGCCGCGACCACGAACCACAGGCTGCTGACCCTGGTCAGCCAGCGCTCGGGCAGGTCGAGCATGCTCAGGCCCACCAGCAAGGAGGCCAGCAACAACAGAAAGTTGCTGGTGCCGGAAAGCACCTTGGCCATTATCTGGCTCAGTGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3799981‑3799827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggcctGAGCATGCTCGACCTGCCCGAGCGCTGGCTGACCAGGGTCAGCAGCCTGTGGTTCGTGGTCGCGGCCTTGC > NC_002947/3799911‑3799981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |