New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3870425	61 (0.850)	4 (0.060)	3/256	NT	6.2%	coding (494/1428 nt)	PP_3419	sigma‑54 dependent transcriptional regulator/response regulator
	?	NC_002947	= 3870443	63 (0.920)					coding (476/1428 nt)	PP_3419	sigma‑54 dependent transcriptional regulator/response regulator

AGGGATCGAAGCGCAATTGAACTCGATGAAAGGCCCTTTACTGCGCGAACCATCGAAATGCAGGGCACGGGCCACCAGTTCCTTGCCAGTACCGGTCTCGCCTTCGATCAGCACCGGTGGCAGGTCGTCACTGGCCATGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3870283‑3870425 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgccAGGTGCTCGATGCCGAGCGGCGCATGGCCA  <  NC_002947/3870443‑3870414                                                                                                                                                                               atcGATCGAATCGCAATTGAACTCGATCAAAGGCCCTTTACTGCCCGAACCATCGAAATGCAGGGCACGGGCCACCAGTTCCTTGCCAGTACCGGTCTCGCCTTCGATCAGCACCGTTGGCAGGTCGTCACTGGCCATG                                    <  5:94193/136‑1 AGGGATCGAAGCGCAATTGAACTCGATGAAAGGCCCTTTACTGCGCGAACCATCGAAATGCAGGGCACGGGCCACCAGTTCCTTGCCAGTACCGGTCTCGCCTTCGATCAGCACCGGTGGCAGGTCGTCACTCGACATG                                    >  6:94193/1‑139                      CTCGATGAAAGGCCCTTTACTGCGCGAACCATCGAAATGCAGGGCACGGGCCACCAGTTCCTTGCCAGTACCGGTCTCGCCTTCGATCAGCACCGGTGGCAGGTCGTCACTGGCCATGCGCCAGGTGCTCGATGCCGAGCGGCGCATGG     <  2:176437/149‑1                         GATGAAAGGCCCTTTACTGCGCGAACCATCGAAATGCAGGGCACGGGCCACCAGTTCCTTGCCAGTACCGGTCTCGCCTTCGATCAGCACCGGTGGCAGGTCGTCACTGGCCATGCGCCAGGTGCTCGATGCCGAGCGGCGCATGGCCA  <  4:105326/149‑1                                                    ATCGAAATGCAGGGCACGGGCCACCAGTTCCTTGCCAGTACCGGTCTCGCCTTCGATCAGCACCGGTGGCAGGTCGTCACTGGCCATGCGCCAGGTGCTCGATGCCGAGCGGCGCATGG     >  1:206963/1‑119                                                    ATCGAAATGCAGGGCACGGGCCACCAGTTCCTTGCCAGTACCGGTCTCGCCTTCGATCAGCACCGGTGGCAGGTCGTCACTGGCCATGCGCCAGGTGCTCGATGCCGAGCGGCGCATGG     <  2:206963/119‑1                                                                                                                                                                               AGGGATCGAAGCGCAATTGAACTCGATGAAAGGCCCTTTACTGCGCGAACCATCGAAATGCAGGGCACGGGCCACCAGTTCCTTGCCAGTACCGGTCTCGCCTTCGATCAGCACCGGTGGCAGGTCGTCACTGGCCATGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3870283‑3870425 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgccAGGTGCTCGATGCCGAGCGGCGCATGGCCA  <  NC_002947/3870443‑3870414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.