New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3895238	56 (0.780)	3 (0.040)	3/254	NT	5.6%	intergenic (‑180/‑112)	yegH/PP_3438	putative transporter/membrane protein
	?	NC_002947	= 3895264	48 (0.710)					intergenic (‑206/‑86)	yegH/PP_3438	putative transporter/membrane protein

AAGGACGGGGGAAGGATGGCCAGAAAGGCCGAAGACTGGGGGGCTCCGCGAAGGTGCTCATATAGACCTTGATAACAAATTGGGAGAACGATACTACAAGCACAGCAGGTTTCTGTAGTAGCGCAAAACTATTACAAAACCTGTAACAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3895087‑3895238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaacccGCGCCTGCAGGGCTAATGGCGATGCAGGGTTGTTACAGGTTTTGTAATAGTTTTGCGCTACTACAGAAACCTGCTGTGCTTGTAGTATCGTTCTCCCAATTTGTTATCAAGGTCTATATGAGCACCTTCGCGGA  <  NC_002947/3895264‑3895131                                                                                                                                                                                                                                                                                                AAGGACGGGGGAAGGATGGCCAGAAAGGCCGAAGACTGGGGGGCTCCGCGAAGGTGCTCATATAGACCTTGATAACAAATTGGGAGAACGATACTACAAGCACAGCAGGTTTCTGTAGTAGCGCAAAACTATTACAAAACCTGTAACAA                                                                                                                                           >  5:342420/1‑149  AGGACGGGGGAAGGATGGCCAGAAAGGCCGAAGACTGGTGGGCTCCGCGAAGGTGCTCATATAGACCTTGATAACAAATTGGGAGAACGATACTACAAGCACAGCAGGTTTCTGTAGTAGCGCAAAACTATTACAAAACCTGTAACAAC                                                                                                                                          <  6:219725/149‑1                                         tcgagCCGCGAAGGTGCTCATATAGACCTTGATAACAAATTGGGAGAACGATACTACAAGCACAGCAGGTTTCTGTAGTATCGCAAAACTATTACAAAACCTGTAACAACCCGCGCCTGCAGGGCTAATGGCGATGCAGGGTTGTTACA                                                                                                   <  2:281136/144‑1                                           GCTCCGCGAAGGTGCTCATATAGACCTTGATAACAAATTGGGAGAACGATACTACAAGCACAGCAGGTTTCTGTAGTAGCGCAAAACTATTACAAAACCTGTAACAACCCGCGCCTGCAGGGCTAATGGCGATGCAGGGTTGTTAC                                                                                                    <  3:70461/146‑1                                           GCTCCGCGAAGGTGCTCATATAGACCTTGATAACAAATTGGGAGAACGATACTACAAGCACAGCAGGTTTCTGTAGTAGCGCAAAACTATTACAAAACCTGTAACAACCCGCGCCTGCAGGGCTAATGGCGATGCAGGGTTGTTAC                                                                                                    >  4:70461/1‑146                                                                                                                                                      CCCGCGCCTGCAGGGCTAATGGCGATGCAGGGTTGTTACAGGTTTTGTAATAGTTTTGCGCTACTACAGAAACCTGCTGTGCTTGTAGTATCGTTCTCCCAATTTGTTATCAAGGTCTATATGAGCACCTTCGCGGA  >  7:176484/1‑137                                                                                                                                                      CCCGCGCCTGCAGGGCTAATGGCGATGCAGGGTTGTTACAGGTTTTGTAATAGTTTTGCGCTACTACAGAAACCTGCTGTGCTTGTAGTATCGTTCTCCCAATTTGTTATCAAGGTCTATATGAGCACCTTCGCGGA  <  8:176484/137‑1                                                                                                                                                                                                                                                                                                AAGGACGGGGGAAGGATGGCCAGAAAGGCCGAAGACTGGGGGGCTCCGCGAAGGTGCTCATATAGACCTTGATAACAAATTGGGAGAACGATACTACAAGCACAGCAGGTTTCTGTAGTAGCGCAAAACTATTACAAAACCTGTAACAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3895087‑3895238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaacccGCGCCTGCAGGGCTAATGGCGATGCAGGGTTGTTACAGGTTTTGTAATAGTTTTGCGCTACTACAGAAACCTGCTGTGCTTGTAGTATCGTTCTCCCAATTTGTTATCAAGGTCTATATGAGCACCTTCGCGGA  <  NC_002947/3895264‑3895131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.