New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3975755	57 (0.800)	4 (0.060)	4/256	NT	6.1%	coding (22/591 nt)	PP_3505	hypothetical protein
	?	NC_002947	= 3975786	68 (0.990)					intergenic (‑10/+68)	PP_3505/PP_3506	hypothetical protein/magnesium chelatase subunit ChII

GTCTGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAGGCCTGCCTTGGCGCTGCTGCCAGCACAGGTCCTGTCGCTGGCGTGGCCGTCCTTTGAGCAAGGTCGGCAGCCAGGCTACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3975604‑3975755 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacccgCCGTGGCCTCGTGCGAAATGCGGCGGCCGGCCGGGTAGCCTGGCTGCCGACCTTGCTCAAAGGACGGCCACGCCAGCGACAGGACCTGTGCTGGCAGCAGCGCCAAGGCAGGCCTGCTGAGTTGTGGCTGGTGATCGTCGATGCCTCG  <  NC_002947/3975786‑3975639                                                                                                                                                                                                                                                                                                              GTCTGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAGGCCTGCCTTGGCGCTGCTGCCAGCACAGGTCCTGTCGCTGGCGTGGCCGTCCTTTGAGCAAGGTCGGCAGCCAGGCTAC                                                                                                                                                         <  5:69180/149‑1                                 AGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAGGCCTGCCTTGGCGCTGCTGCCAGCACAGGTCCTGTCGCTGGCGTGGCCGTCCTTTGAGCAAGGTCGGCAGCCAGGCTACCCGCCGTGGCCTCGTGCGAAATGCGGCGGCCG                                                                                                                         >  3:122303/1‑149                                         CATCGACGATCACCAGCCACAACTCAGCAGGCCTGCCTTGGCGCTGCTGCCAGCACAGGTCCTGTCGCTGGCGTGGCCGTCCTTTGAGCAAGGTCGGCAGCCAGGCTACCCGCCGTGGCCTCGTGCGAAATGCGGCGGCCGGCCGGGTA                                                                                                                 <  8:185472/149‑1                                          ATCGACGATCACCAGCCACAACTCAGCAGGCCTGCCTTGGCGCTGCTGCCAGCACAGGTCCTGTCGCTGGCGTGGCCGTCCTTTGAGCCAGGGCGGCAGCCAGGCTACCCGCCGTGGCCTCGTCCGAAATGCGGCGGCCGGCCGGGTAG                                                                                                                <  3:250233/149‑1                                            CGACGATCACCAGCCACAACTCAGCAGGCCTGCCTTGGCGCTGCTGCCAGCACAGGGCCTGTCGCTGGCGTGGCCGTCCTTTGAGCAAGGTCGGCAGCCAGGCTACCCGCCGTGGCCTCGTGCGAAATGCGGCGGCCGGCCGGGGAGCC                                                                                                              <  4:122303/149‑1                                                                                                                                                       CGCCGTGGCCTCGTGCGAAATGCGGCGGCCGGCCGGGTAGCCTGGCTGCCGACCTTGCTCAAAGGACGGCCACGCCAGCGACAGGACCTGTGCTGGCAGCAGCGCCAAGGCAGGCCTGCTGAGTTGTGGCTGGTGATCGTCGATGCCTC   <  5:365470/149‑1                                                                                                                                                        GCCGTGGCCTCGTGCGAAATGCGGCGGCCGGCCGGGTAGCCTGGCTGCCGACCTTGCTCAAAGGACGGCCACGCCAGCGACAGGACCTGTGCTGGCAGCAGCGCCAAGGCAGGCCTGCTGAGTTGTGGCTGGTGATCGTCGATGCCTCG  <  6:70662/149‑1                                                                                                                                                                                                                                                                                                              GTCTGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAGGCCTGCCTTGGCGCTGCTGCCAGCACAGGTCCTGTCGCTGGCGTGGCCGTCCTTTGAGCAAGGTCGGCAGCCAGGCTACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3975604‑3975755 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacccgCCGTGGCCTCGTGCGAAATGCGGCGGCCGGCCGGGTAGCCTGGCTGCCGACCTTGCTCAAAGGACGGCCACGCCAGCGACAGGACCTGTGCTGGCAGCAGCGCCAAGGCAGGCCTGCTGAGTTGTGGCTGGTGATCGTCGATGCCTCG  <  NC_002947/3975786‑3975639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.