New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 406559162 (0.870)4 (0.060) 4/260 NT 6.1% coding (369/1491 nt) PP_3582 RND transporter outer membrane protein
?NC_002947 = 4065640 62 (0.890)coding (320/1491 nt) PP_3582 RND transporter outer membrane protein

CAGGGTTTCGCGCAGCTTGCCCCACAGGTCGATCTCCCAGCTCACGCCCAACTGCGCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4065441‑4065591
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGAGCACCAGCAAGAACCGCTCGGCGCAGGGCACCGGCAGCTCCAGTTCCAGCCTGTCCAATAACAGCAGCGGCATTCGCAACACCTACAACGCG  <  NC_002947/4065640‑4065495
                                                                                                                                                                                                                                                                                                         
CAGGGTTTCGCGCAGCTTGCCCCACAGGTCGATCTCCCAGCTCACGCCCAACTGCGCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTC                                                                                                                                                       <  7:341880/148‑1
 AGGGTTTCGCGCAGCTTGCCCCACAGGTCGAACTCCCAGCTCCCGCCCAACTGCGCCTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGACCTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAG                                                                                                                                                     >  3:252067/1‑149
                   CCCCACAGGTCGATCTCCCAGCTCACGCCCAACTGCGCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGCCCAGGCGCTGGTGCG                                                                                                                                    >  2:241008/1‑148
                                                        CGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGA                                                                                              <  1:241008/149‑1
                                                                              GCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACC                                                                                                 <  5:288423/124‑1
                                                                              GCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACC                                                                                                 >  6:288423/1‑124
                                                                                                                                                   CAGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGAGCACCAGCAAGAACCGCTCGGCGCAGGGCACCGGCAGCTCCAGTTCCAGCCTGTCCAATAACAGCAGCGGCATTCGCAACACCTACAACGC   <  6:294380/149‑1
                                                                                                                                                    AGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGAGCACCAGCAAGAACCGCTCGGCGCAGGGCACCGGCAGCTCCAGTTCCAGCCTGTCCAATAACAGCAGCGGCATTCGCAACACCTACAACGCG  <  5:1261/149‑1
                                                                                                                                                      GCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGAGCACCAGCAAGAACCGCTCGGCGCAGGGCACCGGCAGCTCCAGTTCCAGCCTGTCCAATAACAGCAGCGGCATTCGCAACACCTACAACGCG  >  6:42997/1‑147
                                                                                                                                                                                                                                                                                                         
CAGGGTTTCGCGCAGCTTGCCCCACAGGTCGATCTCCCAGCTCACGCCCAACTGCGCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4065441‑4065591
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGAGCACCAGCAAGAACCGCTCGGCGCAGGGCACCGGCAGCTCCAGTTCCAGCCTGTCCAATAACAGCAGCGGCATTCGCAACACCTACAACGCG  <  NC_002947/4065640‑4065495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.