New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4443473 =	56 (0.780)	4 (0.060)	4/258	NT	6.4%	coding (509/1314 nt)	nicT	metabolite transport protein NicT
	?	NC_002947	4443511 =	64 (0.930)					coding (471/1314 nt)	nicT	metabolite transport protein NicT

CCTGCGTTTCCTGCTGGGGGCGGCCGAGGCCGGCTTCCTGCCAGGCGTGCTGTACTACCTGACCATGTGGTACCCCACCTATCGCCGCGGGCGCATCATTGCCCTGTTCATGATCGGGCTGCCGTTGTCGAGCGTGATTGGCGGGCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4443622‑4443473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgatCATGAACAGGGCAATGATGCGCCCGCGGCGATAGGTGGGGTACCACATGGTCAGGTAGTACAGCACGCCTGGCAGGAAGCCGGCCTCGGCCGCCCCCAGCAGGAAACGCAGGATATAGAACTGGGTGGTGCTGGTGACGAACATG  >  NC_002947/4443511‑4443655                                                                                                                                                                                                                                                                                                         CCTGCGTTTCCTGCTGGGGGCGGCCGAGGCCGGCTTCCTGCCAGGCGTGCTGTACTACCTGACCATGTGGTACCCCACCTATCGCCGCGGGCGCATCATTGCCCTGTTCATGATCGGGCTGCCGTTGTCGAGCGTGATTGGCGGGCCGA                                                                                                                                                    >  4:311463/1‑149                                                                                                              ATGATCGGGCTGCCGTTGTCGAGCGTGATTGGCGGGCCGATCATGAACAGGGCAATGATGCGCCCGCGGCGATAGGTGGGGTACCACATGGTCAGGTAGTACAGCACGCCTGGCAGGAAGCCGGCCTCGGCCGCCCCCAGCAGGAAACG                                       >  3:397220/1‑149                                                                                                                GATCGGGCTGCCGTTGTCGAGCGTGATTGGCGGGCCGATCATGAACAGGGCAATGATGCGCCCGCGGCGATAGGTGGGGTACCACATGGTCAGGTAGTACAGCACGCCTGGCAGGAAGCCGGCCTCGGCCGCCCCCAGCAGGAAACG                                       >  8:100959/1‑147                                                                                                                  TCGGGCTGCCGTTGTCGAGCGTGATTGGCGGGCCGATCATGAACAGGGCAATGATGCGCCCGCGGCGATAGGTGGGGTACCACATGGGCAGGTAGTACAGCACGCCTGGCAGGAAGCCGGACTCGGCCGCCACCAGCAGGCAACGCAG                                    >  4:13779/1‑148                                                                                                                                            GGCGGGCCGATCATGAACAGGGCAATGATGCGCCCGCGGCGATAGGTGGGGTACCACATGGTCAGGTAGTACAGCACGCCTGGCAGGAAGCCGGCCTCGGCCGCCCCCAGCAGGAAACGCAGGATATAGAACTGGGTGGTGCTGGTGA          <  4:397220/148‑1                                                                                                                                                  CCGATCATGAACAGGGCAATGATGCGCCCGCGGCGATAGGTGGGGTACCACATGGTCAGGTAGTACAGCACGCCTGGCAGGAAGCCGGCCTCGGCCGCCCCCAGCAGGAAACGCAGGATATAGAACTGGGTGGTGCTGGTGACGAACAT   <  4:29926/149‑1                                                                                                                                                   CGATCATGAACAGGGCAATGATGCGCCCGCGGCGATAGGTGGGGTACAACATGGTCAGGTAGTACAGCACGCCTGGCAGGAAGCCGGCCTCGGCCGCCCCCAGCAGGAAACGCAGGATATAGAACTGGGTGGTGCTGGTGACGAACATG  <  8:351511/149‑1                                                                                                                                                                                                                                                                                                         CCTGCGTTTCCTGCTGGGGGCGGCCGAGGCCGGCTTCCTGCCAGGCGTGCTGTACTACCTGACCATGTGGTACCCCACCTATCGCCGCGGGCGCATCATTGCCCTGTTCATGATCGGGCTGCCGTTGTCGAGCGTGATTGGCGGGCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4443622‑4443473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgatCATGAACAGGGCAATGATGCGCCCGCGGCGATAGGTGGGGTACCACATGGTCAGGTAGTACAGCACGCCTGGCAGGAAGCCGGCCTCGGCCGCCCCCAGCAGGAAACGCAGGATATAGAACTGGGTGGTGCTGGTGACGAACATG  >  NC_002947/4443511‑4443655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.