| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4552519 = | 72 (1.010) | 5 (0.070) | 5/254 | NT | 7.1% | coding (90/522 nt) | rutR | transcriptional regulator, TetR family |
| ? | NC_002947 | 4552553 = | 63 (0.930) | coding (56/522 nt) | rutR | transcriptional regulator, TetR family | |||||
AATATCGAAAAAATCCTGCAAGCGGCGGAAAAGGTGTTTGCGAGAAGGGCTACGGCGCCACCTCCATGGGCGATATCGCCGAGCAGGCTGAGCTGCCACGCTCCAACCTGCATTATTACTTCAGCACCAAGGACGAGCTGTTCCGCGCGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4552673‑4552519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCGATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTTTTTCGATATTGCGTCGGCGGATTTCGATCTTGTGATT > NC_002947/4552553‑4552700 AATATCGAAAAAATCCTGCAAGCGGCGGAAAAGGTGTTTGCGAGAAGGGCTACGGCGCCACCTCCATGGGCGATATCGCCGAGCAGGCTGAGCTGCCACGCTCCAACCTGCATTATTACTTCAGCACCAAGGACGAGCTGTTCCGCGCG > 1:350085/1‑149AATATCGAAAAAATCCTGCAAGCGGCGGAAAAGGTGTTTGCGAGAAGGGCTACGGCGCCACCTCCATGGGCGATATCGCCGAGCAGGCTGAGCTGCCACGCTCCAACCTGCATTATTACTTCAGCACCAAGGACGAGCTGTTCCGCGCG > 8:227978/1‑149AATATCGAAAAAATCCTGCAAGCGGCGGAAAAGGTGTTTGCGAGAAGGGCTACGGCGCCACCTCCATGGGCGATATCGCCGAGCAGGCTGAGCTGCCACGCTCCAACCTGCATTATTACTTCAGCACCAAGGACGAGCTGTTCCGCGCG > 8:221839/1‑149 TCGAAAAAATCCTGCAAGCGGCGGAAAAGGTGTTTGCGAGAAGGGCTACGGCGCCACCTCCATGGGCGATATCGCCGAGCAGGCTGAGCTGCCACGCTCCAACCTGCATTATTACTTCAGCACCAAGGACGAGCTGTTCCGCGCGGTG < 3:316109/148‑1 CGAAAAAATCCTGCAAGCGGCGGAAAAGGTGTTTGCGAGAAGGGCTACGGCGCCACCTCCATGGGCGATATCGCCGAGCAGGCTGAGCTGCCACGCTCCAACCTGCATTATTACTTCAGCACCAAGGACGAGCTGTTCCGCGCGGTGCT > 7:86960/1‑149 GAAAAAATCCTGCAAGCGGCGGAAAAGGTGTTTGCGAGAAGGGCTACGGCGCCACCTCCATGGGCGATATCGCCGAGCAGGCTGAGCTGCCACGCTCCAACCTGCATTATTACTTCAGCACCAAGGCCGAGCTGTTCCGCGCGGTGCTG > 3:358580/1‑149 TCCTGCAAGCGGCGGAAAAGGTGTTTGCGAGAAGGGCTACGGCGCCACCTCCATGGGCGATATCGCCGAGCAGGCTGAGCTGCCACGCTCCAACCTGCATTATTACTTCAGCACCAAGGACGAGCTGTTCCGCGCGGTGCTG < 8:206742/142‑1 TCCTGCAAGCGGCGGAAAAGGTGTTTGCGAGAAGGGCTACGGCGCCACCTCCATGGGCGATATCGCCGAGCAGGCTGAGCTGCCACGCTCCAACCTGCATTATTACTTCAGCACCAAGGACGAGCTGTTCCGCGCGGTGCTG > 7:206742/1‑142 ACTTCAGCACCAAGGACGAGCTGTTCCGCGCGGTGCTGAAGTAAAAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCGATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTT > 1:89241/1‑149 TTCAGCACCAAGGACGAGCTGTTCCGCGCGGTGCTGAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTC < 7:168551/77‑1 TTCAGCACCAAGGACGAGCTGTTCCGCGCGGTGCTGAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTC > 8:168551/1‑77 CACCAAGGACGAGCTGTTCCGCGCGGTGCTGAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCGATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTTTTTCGA > 5:212845/1‑148 TTCCGCGCGGTGCTGAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCGATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTTTTTCGATATTGCGTCGGCGGATT < 6:212845/149‑1 GGTGCTGAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCGATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTTTTTCGATATTGCGTCGGCGGATTTCGATCTT > 7:403529/1‑149 GGTGCTGAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCGATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTTTTTCGATATTGCGTCGGCGGATTTCGATC < 3:359608/147‑1 GGTGCTGAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCAATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTTTTTCGATATTGCGTCGGCGGATTTCGATCTT > 5:69050/1‑149 GTGCTGAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCAATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTTTTTCGATATTGCGTCGGCGGATTTCGATCTTG < 6:69050/149‑1 CTGAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCGATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTTTTTCGATATTGCGTCGGCGGATTTCGATCTTGTGA < 2:422206/149‑1 GAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCGATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTTTTTCGATATTGCGTCGGCGGATTTCGATCTTGTGATT > 3:189899/1‑149 AATATCGAAAAAATCCTGCAAGCGGCGGAAAAGGTGTTTGCGAGAAGGGCTACGGCGCCACCTCCATGGGCGATATCGCCGAGCAGGCTGAGCTGCCACGCTCCAACCTGCATTATTACTTCAGCACCAAGGACGAGCTGTTCCGCGCGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4552673‑4552519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgAAGTAATAATGCAGGTTGGAGCGTGGCAGCTCAGCCTGCTCGGCGATATCGCCCATGGAGGTGGCGCCGTAGCCCTTCTCGCAAACACCTTTTCCGCCGCTTGCAGGATTTTTTCGATATTGCGTCGGCGGATTTCGATCTTGTGATT > NC_002947/4552553‑4552700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |