New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4820219 | 63 (0.880) | 4 (0.060) | 4/260 | NT | 5.9% | coding (10971/12954 nt) | pvdL | non‑ribosomal peptide synthetase |
? | NC_002947 | = 4820262 | 66 (0.950) | coding (10928/12954 nt) | pvdL | non‑ribosomal peptide synthetase |
CGCGATGTAGCTCTGCTCCAGCGGATAAACCCGCTCGGTCCGGTTGCAGTCCTCCAGCAGGAAGCCTTGCTCCTGGGCGCTCAGCAGCGGTAGCTCGCTCACCTCCCCTTCAAAACCTTGTACCAGCGCCAGCAGCAGGCGCTTGAATTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4820069‑4820219 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgACCAGCGCTACTTCGACTACCCGACCGTCGAGCGCCTGCTGGCCGAATTCAAGCGCCTGCTGCTGGCGCTGGTACAAGGTTTTGAAGGGGAGGTGAGCGAGCTACCGCTGCTGAGCGCCCAGGAGCAAGGCTTCCTGCTGGAGGACT < NC_002947/4820262‑4820116 CGCGATGTAGCTCTGCTCCAGCGGATAAACCCGCTCGGTCCGGTTGCAGTCCTCCAGCAGGAAGCCTTGCTCCTGGGCGCTCAGCAGCGGTAGCTCGCTCACCTCCCCTTCAAAACCTTGTACCAGCGCCAGCAGCAGGCGCTTGAATT > 3:341256/1‑149 CGATGTAGCTCTGCTCCAGCGGATAAACCCGCTCGGTCCGGTTGCAGTCCTCCAGCAGGAAGCCTTGCTCCTGGGCGCTCAGCAGCGGTAGCTCGCTCACCTCCCCTTCAAAACCTTGTACCAGCGCCAGCAGCAGGCGCTTGAATTCG < 1:405580/149‑1 CGATGTAGCTCTGCTCCAGCGGATAAACCCGCTCGGTCCGGTTGCAGTCCTCCAGCAGGAAGCCTTGCTCCTGGGCGCTCAGCAGCGGTAGCTCGCTCACCTCCCCTTCAAAACCTTGTACCAGCGCCAGCAGCAGGCGCTTGAATTCG < 8:350919/149‑1 TCCTCCAGCAGGAAGCCTTGCTCCTGGGCGCTCAGCAGCGGTAGCTCGCTCACCTCCCCTTCAAAACCTTGTACCAGCGCCAGCAGCAGGCGCTTGAATTCGACCAGCGCTACTTCGACTACCCGACCGTCGAGCGCCTGCTGGCCGAA < 7:75819/149‑1 CTCCAGCAGGAAGCCTTGCTCCTGGGCGGTCTGCAGCGTTAGCTCGCTCACCTCCCCTTGAAAACGTTGTACCAGCGCCAGCAGCAGGCGCTTGAATTCGACCAGCGCTACTTCGACTACCCGACCGTCGAGCGCCTGCTGGCCGAATT < 2:132314/149‑1 GGAAGCCTTGCTCCTGGGCGCTCAGCAGCGGTAGCTCGCTCACCTCCCCTTCAAAACCTTGTACCAGCGCCAGCAGCAGGCGCTTGAATTCGACCAGCGCTACTTCGACTACCCGACCGTCGAGCGCCTGCTGGCC > 5:59555/1‑136 GGAAGCCTTGCTCCTGGGCGCTCAGCAGCGGTAGCTCGCTCACCTCCCCTTCAAAACCTTGTACCAGCGCCAGCAGCAGGCGCTTGAATTCGACCAGCGCTACTTCGACTACCCGACCGTCGAGCGCCTGCTGGCC < 6:59555/136‑1 TTCGACCAGCGCTACTTCGACTACCCGACCGTCGAGCGCCTGCTGGCCGAATTCAAGCGCCTGCTGCTGGCGCTGGTACAAGGTTTTGAAGGGGAGGTGAGCGAGCTACCGCTGCTGAGCGCCCAGGAGCAAGGCTTCCTGCTGGAGGA > 8:272721/1‑149 GACCAGCGCTACTTCGACTACCCGACCGTCGAGCGCCTGCTGGCCGAATTCAAGCGCCTGCTGCTGGCGCTGGTACAAGGTTTTGAAGGGGAGGTGAGCGAGCTACCGCTGCTGAGCGCCCAGGAGCAAGGCTTCCTGCTGGAGGACT < 5:160192/148‑1 CGCGATGTAGCTCTGCTCCAGCGGATAAACCCGCTCGGTCCGGTTGCAGTCCTCCAGCAGGAAGCCTTGCTCCTGGGCGCTCAGCAGCGGTAGCTCGCTCACCTCCCCTTCAAAACCTTGTACCAGCGCCAGCAGCAGGCGCTTGAATTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4820069‑4820219 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgACCAGCGCTACTTCGACTACCCGACCGTCGAGCGCCTGCTGGCCGAATTCAAGCGCCTGCTGCTGGCGCTGGTACAAGGTTTTGAAGGGGAGGTGAGCGAGCTACCGCTGCTGAGCGCCCAGGAGCAAGGCTTCCTGCTGGAGGACT < NC_002947/4820262‑4820116 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |