| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5404329 = | 90 (1.260) | 4 (0.060) | 3/236 | NT | 5.4% | intergenic (‑627/+90) | PP_4746/PP_4748 | transposase/amino acid ABC transporter substrate‑binding protein |
| ? | NC_002947 | 5404391 = | 62 (0.980) | intergenic (‑689/+28) | PP_4746/PP_4748 | transposase/amino acid ABC transporter substrate‑binding protein | |||||
GCAGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5404490‑5404329‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcattcgcggctaAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTGCCCAGTGCCT > NC_002947/5404391‑5404537 GCAGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGT < 1:377430/149‑1 CAGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTATGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTT < 7:155328/149‑1 CAGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTT < 4:337461/149‑1 TCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCG < 3:52546/149‑1 CTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCG > 4:401866/1‑149 TCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCG > 3:332370/1‑148 GCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGG < 7:267901/147‑1 CCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTA > 5:288444/1‑149 CCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGC > 4:156504/1‑147 CGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAG > 1:261297/1‑149 CGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGA > 3:108860/1‑149 CGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTAAAGCCGCGCCTACGGGANTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGA > 3:114842/1‑149 GTTCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTC < 5:272007/149‑1 GTTCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCATCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTC > 4:247434/1‑149 TCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTT > 2:77123/1‑149 CATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTT < 8:85368/148‑1 GCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTGCCCAG > 5:91742/1‑149 GCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTGCCCAG > 3:82010/1‑149 TAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTGCCCAGTGCCT > 5:122749/1‑149 GCAGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5404490‑5404329‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcattcgcggctaAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTGCCCAGTGCCT > NC_002947/5404391‑5404537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |