| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5717240 | 70 (0.980) | 4 (0.060) | 4/258 | NT | 6.2% | intergenic (+40/‑62) | PP_5019/PP_5020 | 16S rRNA (uracil(1498)‑N(3))‑methyltransferase/methyl‑accepting chemotaxis protein |
| ? | NC_002947 | = 5717290 | 54 (0.780) | intergenic (+90/‑12) | PP_5019/PP_5020 | 16S rRNA (uracil(1498)‑N(3))‑methyltransferase/methyl‑accepting chemotaxis protein | |||||
CCCCTACGAGGTCGACCTGCTGGGCAAGGCAGGCCTGGCGCCGGTACAGCTGGGTGATCGCATCTTGCGGGTGGAGACCGCCGTCACCGCGCTGCTTTCGCGTATTTTCTGACACAAACACCCCTTCTTCGCCCATCAAGTTTCCCCCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5717089‑5717240‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcccCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGGGAGGGGGAAACTTGATGGGCGAAGAAGGGGTGTTTGTGTCAGAAAATACGCGAAAGCAGCGCGGTGACGGCGGTCTCCACCCGCAAGATGCGATCA < NC_002947/5717290‑5717143 CCCCTACGAGGTCGACCTGCTGGGCAAGGCAGGCCTGGCGCCGGTACAGCTGGGTGATCGCATCTTGCGGGTGGAGACCGCCGTCACCGCGCTGCTTTCGCGTATTTTCTGACACAAACACCCCTTCTTCGCCCATCAAGTTTCCCCCT > 4:58543/1‑149CCCCTACGAGGTCGACCTGCTGGGCAAGGCAGGCCTGGCGCCGGTACAGCTGGGTGATCGCATCTTGCGGGTGGAGACCGCCGTCACCGCGCTGCTTTCGCGTATTTTCTGACACAAACACCCCTTCTTCGCCCATCAAGTTTCCCCCT > 8:347754/1‑149 CCTACGAGGTCGACCTGCTGGGCAAGGCAGGCCTGGCGCCGGTACAGCTGGGTGATCGCATCTTGCGGGTGGAGACCGCCGTCACCGCGCTGCTTTCGCGTATTTTCTGACACAAACACCCCTTCTTCGCCCATCAAGTTTCCCCCTCC > 6:219968/1‑149 CTACGAGGTCGACCTGCTGGGCAAGGCAGGCCTGGCGCCGGTACAGCTGGGTGATCGCATCTTGCGGGTGGAGACCGCCGTCACCGCGCTGCTTTCGCGTATTTTCTGACACAAACACCCCTTCTTCGCCCATCAAGTTTCCCCCTCCC > 2:325420/1‑149 TCGCATCTTGCGGGTGGAGACCGCCGTCACCGCGCTGCTTTCGCGTATTTTCTGACACAAACACCCCTTCTTCGCCCATCAAGTTTCCCCCTCCCCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGG > 8:154649/1‑147 GCATCTTGCGGGTGGAGACCGCCGTCACCGCGCTGCTTTCGCGTATTTTCTGACACAAACACCCCTTCTTCGCCCATCAAGTTTCCCCCTCCCCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGGGAGG < 7:154649/149‑1 TTGCGGGTGGAGACCGCCGTCACCGCGCTGCTTTCGCGTATTTTCTGACACAAACACCCCTTCTTCGCCCATCAAGTTTCCCCCTCCCCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGGGAGGGGGA > 8:387588/1‑148 GCGGGTGGAGACCGCCGTCACCGCGCTGCTTTCGCGTATTTTCTGACACAAACACCCCTTCTTCGCCCATCAAGTTTCCCCCTCCCCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGGGAGGGGGA < 7:387588/146‑1 TCCCCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGGGAGGGGGAAACTTGATGGGCGAAGAAGGGGTGTTTGTGTCAGAAAATACGCGAAAGCAGCGCGGTGACGGCGGTCTCCACCCGCAAGATGCGA > 3:148749/1‑149 CCCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGGGAGGGGGAAACTTGATGGGCGAAGAAGGGGTGTTTGTGTCAGAAAATACGCGAAAGCAGCGCGGTGACGGCGGTCTCCACCCGCAAGATGCGATC > 8:373804/1‑149 CCCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGGGAGGGGGAAACTTGATGGGCGAAGAAGGGGTGTTTGTGTCAGAAAATACGCGAAAGCAGCGCGGTGACGGCGGTCTCCACCCGCAAGATGCGAT > 1:418169/1‑148 CCCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGGGAGGGGGAAACTTGATGGGCGAAGAAGGGGTGTTTGTGTCAGAAAATACGCGAAAGCAGCGCGGTGACGGCGGTCTCCACCCGCAAGATGCGAT > 7:110675/1‑148 CCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGGGAGGGGGAAACTTGATGGGCGAAGAAGGGGTGTTTGTGTCAGAAAATACGCGAAAGCAGCGCGGTGACGGCGGTCTCCACCCGCAAGATGCGATCA > 4:152544/1‑149 CCCCTACGAGGTCGACCTGCTGGGCAAGGCAGGCCTGGCGCCGGTACAGCTGGGTGATCGCATCTTGCGGGTGGAGACCGCCGTCACCGCGCTGCTTTCGCGTATTTTCTGACACAAACACCCCTTCTTCGCCCATCAAGTTTCCCCCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5717089‑5717240‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcccCGGCGGCTTGGCAGCACAAATAATTGTATTGTTGCCAAGGCCATCGGCCCGGGAGGGGGAAACTTGATGGGCGAAGAAGGGGTGTTTGTGTCAGAAAATACGCGAAAGCAGCGCGGTGACGGCGGTCTCCACCCGCAAGATGCGATCA < NC_002947/5717290‑5717143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |