| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5789214 | 55 (0.770) | 4 (0.060) | 4/254 | NT | 7.8% | coding (371/1278 nt) | ynfM | efflux transporter |
| ? | NC_002947 | = 5789242 | 42 (0.620) | coding (399/1278 nt) | ynfM | efflux transporter | |||||
CCATCAACGCGGCACAGAGCAGCCTGGTGCTGTCGGTGTCCACCGCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5789061‑5789214‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccagTACCAGCTCCCAGCTGGGCATCACTGCGCTGGCCAAGGTGGACAGGGCGGCGCAGACCAGCGCGAACACCATCACGGGCTTGCGTCCGATGCGGTCAGAAATGGGGCCGGTGATCAGCAGGCCGAACGCCAGCATGGCGGTG < NC_002947/5789242‑5789101 CCATCAACGCGGCACAGAGCAGCCTGGTGCTGTCGGTGTCCACCGCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTG < 7:269233/149‑1CCATCAACGCGGCACAGAGCAGCCTGGTGCTGTCGGTGTCCACCGCCATGCTGGCGTTCGGCCTGCTGATCAACGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTG > 6:317986/1‑149 CATCAACGCGGCACAGAGCAGCCTGGTGCTGTCGGTGTCCACCGCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTGG > 1:288837/1‑149 CATCAACGCGGCACAGAGCAGCCTGGTGCTGTCGGTGTCCACCGCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTGG > 2:76358/1‑149 CATCAACGCGGCACAGAGCAGCCTGGTGCTGTCGGTGTCCACCGCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTGG < 3:321454/149‑1 ATCAACGCGGCACAGAGCAGCCTGGTGCTGTCGGTGTCCACCGCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTGGC < 5:272516/149‑1 ACAGAGCAGCCTGGTGCTGTCGGTGTCCACCGCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTGGCCAGTACCAGCT > 6:98912/1‑149 CCGCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTGGCCAGTACCAGCTCCCAGCTGGGCATCACTGCGCTGGCCAAG < 6:110476/149‑1 CGCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTGGCCAGTACCAGCTCCCAGCTGGGCATCACTGCGCTGGCCAAGG < 5:98912/149‑1 GCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTGGCCAGTACCAGCTCCCAGCTGGGCATCACTGCGCTGGCCAAGGT < 5:380166/149‑1 GGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCACCCTGTCCACCTTGGCCA > 5:429840/1‑101 GGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCACCCTGTCCACCTTGGCCA < 6:429840/101‑1 TGGCCAGTACCAGCTCCCAGCTGGGCATCACTGCGCTGGCCAAGGTGGACAGGGCGGCGCAGACCAGCGCGAACACCATCACGGGCTTGCGTCCGATGCGGTCAGAAATGGGGCCGGTGATCAGCAGGCCGAACGCCAGCATGGCGGTG < 4:22994/149‑1 TGGCCAGTACCAGCTCCCAGCTGGGCATCACTGCGCTGGCCAAGGTGGACAGGGCGGCGCAGACCAGCGCGAACACCATCACGGGCTTGCGTCCGATGCGGTCAGAAATGGGGCCGGTGATCAGCAGGCCGAACGCCAGCATGGCGGTG < 6:396377/149‑1 CCATCAACGCGGCACAGAGCAGCCTGGTGCTGTCGGTGTCCACCGCCATGCTGGCGTTCGGCCTGCTGATCACCGGCCCCATTTCTGACCGCATCGGACGCAAGCCCGTGATGGTGTTCGCGCTGGTCTGCGCCGCCCTGTCCACCTTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5789061‑5789214‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccagTACCAGCTCCCAGCTGGGCATCACTGCGCTGGCCAAGGTGGACAGGGCGGCGCAGACCAGCGCGAACACCATCACGGGCTTGCGTCCGATGCGGTCAGAAATGGGGCCGGTGATCAGCAGGCCGAACGCCAGCATGGCGGTG < NC_002947/5789242‑5789101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |