New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5999313 =	75 (1.050)	4 (0.060)	4/238	NT	6.4%	intergenic (‑168/‑153)	ycaC‑IV/PP_5256	putative hydrolase/cyclic nucleotide‑binding protein
	?	NC_002947	5999373 =	50 (0.790)					intergenic (‑228/‑93)	ycaC‑IV/PP_5256	putative hydrolase/cyclic nucleotide‑binding protein

CCAGCATGGTGATCTCGGGGGTGAGGGGAGGGCTGTGGGTAGTAATAGAGCAGGTTTGCCAGGCAGGCAATGCAAGCCTGTGCTGGCCCCTTCGCGACTTGCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5999472‑5999313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggaacgggcAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATC  >  NC_002947/5999373‑5999516                                                                                                                                                                                                                                                                                                                   CCAGCGTGGTGATCTCGGGGGTGAGGGGAGGGCTGTGGGTAGTAATAGAGCAGGTTTGCCAGGCAGGCAATGCAAGCCTGTGCTGGCCCCTTCGCGACTTGCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTG                                                                                                                                                              >  7:388162/1‑149  CAGCATGGTGATCTCGGGGGTGAGGGGAGGGCTGTGGGTAGTAATAGAGCAGGTTTGCCAGGCAGGCAATGCAAGCCTGTGCTGGCCCCTTCGCGACTTGCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGT                                                                                                                                                             >  3:132342/1‑149          TGATCTCGGGGGTGAGGGGAGGGCTGTGGGTAGTAATAGAGCAGGTTTGCCAGGCAGGCAATGCAAGCCTGTGCTGGCCCCTTCGCGACTTGCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGG                                                                                                                                                     <  6:338980/149‑1            ATCTCGGGGGTGAGGGGAGGGCTGTGGGTAGTAATAGAGCAGGTTTGCCAGGCAGGCAATGCAAGCCTGTGCTGGCCCCTTCGCGACTTGCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGG                                                                                                                                                    <  7:84536/148‑1             TCTCGGGGGTGAGGGGAGGGCTGTGGGTAGTAATACAGCAGGTTTGCCAGGCAGGCAATGCAAGCCTGTGCTGGCCCCTTCGCGACTTGCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGC                                                                                                                                                   <  3:253169/148‑1                                                                                                       CCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATC                                                        >  4:376649/1‑148                                                                                                          TTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCGTGCCCGCGAAGAGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCAC                                                      >  8:376962/1‑148                                                                                                              CACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCT                                                >  3:73091/1‑149                                                                                                                   GTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGCAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGT                                           <  4:73091/149‑1                                                                                                                                                   CTGTGGGAACGGGCAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTAACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGC           >  7:180842/1‑149                                                                                                                                                     GTGGGAACGGGCAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGC         >  7:4275/1‑149                                                                                                                                                        GGAACGGGCAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCT       <  2:380938/148‑1                                                                                                                                                        GGAACGGGCAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCT       <  5:125844/148‑1                                                                                                                                                         GAACGGGCAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTT      >  1:435457/1‑148                                                                                                                                                           ACGGGCAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGTCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGA    <  4:111257/148‑1                                                                                                                                                            CGGGCAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATC  <  8:223135/149‑1                                                                                                                                                                                                                                                                                                                   CCAGCATGGTGATCTCGGGGGTGAGGGGAGGGCTGTGGGTAGTAATAGAGCAGGTTTGCCAGGCAGGCAATGCAAGCCTGTGCTGGCCCCTTCGCGACTTGCCCGTTCCCACAGGTAAAGCGCTGGTTTTGAATCTTGTGCGATCCCTGTGGGAACGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5999472‑5999313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggaacgggcAAG‑TCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATC  >  NC_002947/5999373‑5999516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.