| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6047967 | 57 (0.800) | 4 (0.060) | 4/256 | NT | 6.0% | coding (442/1050 nt) | PP_5300 | LysR family transcriptional regulator |
| ? | NC_002947 | = 6048039 | 72 (1.050) | coding (514/1050 nt) | PP_5300 | LysR family transcriptional regulator | |||||
GCTCGATCCGCCGATTGGAGTCGGCGCTGGGCACCGCCTTGTTCGTCAAGAGCCGAAAGGGCTATCTGCCGACTGACACCGCCCAGGCCTTGGCCGAGCAGGCCGAACGTGCCGAGCAGGCGCTGGAAGCAGCGCGCATTGCCATGACCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6047815‑6047967‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagtgCCGGCAGCAACAGGCTGTGCATCACCGCCTCCGTGCAGGTAAGGCGCACCGTGCCGCTGACCACCTGCTCGCCACTGGTCATGGCAATGCGCGCTGCTTCCAGCGCCTGCTCGGCACGTTCGGCCTGCTCGGCCAAGGCCTGGG < NC_002947/6048039‑6047896 GCTCGATCCGCCGATTGGAGTCGGCGCTGGGCACCGCCTTGTTCGTCAAGAGCCGAAAGGGCTATCTGCCGACTGACACCGCCCAGGCCTTGGCCGAGCAGGCCGAACGTGCCGAGCAGGCGCTGGAAGCAGCGCGCATTGCCATGAC > 8:243493/1‑148 CTCGATCCGCCGATTGGAGTCGGCGCTGGGCACCGCCTTGTTCGTCAAGAGCCGAAAGGGCTATCTGCCGACTGACACCGCCCAGGCCTTGGCCGAGCATGCCGAACGTGCAGAGCAGGCGCTGGAAGCAGCGCGCATTGCCATGAC > 7:158575/1‑147 tccATCCGCCGATTGGAGTCGGCGCTGGGCACCGCCTTGTTCGTCAAGACCCGAAAGGGCTATCTGCCGACTGACACCGCCCAGGCCTTGGCCGAGAAGGCCGAACGTGCCGAGCAGGCGCTGGAAGCAGCGCGCATAGCCATGACCAG > 4:285898/4‑149 GATCCGCCGATTGGAGTCGGCGCTGGGCACCGCCTTGTTCGTCAAGAGCCGAAAGGGCTATCTGCCGACTGACACCGCCCAGGCCTTGGCCGAGCAGGCCGAACGTGCCGAGCAGGCGCTGGAAGCAGCGCGCATTGCCATGACCAGTG < 3:265763/149‑1 GATCCGCCGATTGGAGTCGGCGCTGGGCACCGCCTTGTTCGTCAAGAGCCGAAAGGGCTATCTGCCGACTGACACCGCCCAGGCCTTGGCCGAGCAGGCCGAACGTGCCGAGCAGGCGCTGGAAGCAGCGCGCATTGCCATGACCAGT < 7:286262/148‑1 AAGAGCCGAAAGGGCTATCTGCCGACTGACACCGCCCAGGCCTTGGCCGAGCAGGCCGAACGTGCCGAGCAGGCGCTGGAAGCAGCGCGCATTGCCATGACCAGTGCCGGCAGCAACAGGCTGTGCATCACCGCCTCCGTGCAGGTAAG > 7:360150/1‑149 AGGCCTTGGCCGAGCAGGCCGAACGTGCCGAGCAGGCGCTGGAAGCAGCGCGCATTGCCATGACCAGTGCCGGCAGCAACAGGCTGTGCATCACCGCCTCCGTGCAGGTAAGGCGCACCGTGCCGCTGACCACCTGCTCGCCACTGGTC < 8:360150/149‑1 GTGCCGAGCAGGCGCTGGAAGCAGCGCGCATTGCCATGACCAGTGCCGGCAGCAACAGGCTGTGCATCACCGCCTCCGTACAGGTAAGGCGCACCGTGCCGCTGACCACCTGCTCGCCACTGGTCA > 5:426637/1‑126 GTGCCGAGCAGGCGCTGGAAGCAGCGCGCATTGCCATGACCAGTGCCGGCAGCAACAGGCTGTGCATCACCGCCTCCGTACAGGTAAGGCGCACCGTGCCGCTGACCACCTGCTCGCCACTGGTCA < 6:426637/126‑1 CCAGTGCCGGCAGCAACAGGCTGTGCATCACCGCCTCCGTGCAGGTAAGGCGCACCGTGCCGCTGACCACCTGCTCGCCACTGGTCATGGCAATGCGCGCTGCTTCCAGCGCCTGCTCGGCACGTTCGGCCTGCTCGGCCAAGGCCTGG > 2:124526/1‑149 CAGTGCCGGCAGCAACAGGCTGCGCATCACCGCCTCCGTGCAGGTAAGGCGCACCGTGCCGCTGACCACCTGCTCGCCACTGGTCATGGCAATGCGCGCTGCTTCCAGCGCCTGCTCGGCACGTTCGGCCTGCTCGGCCAAGGCCTGGG > 4:307996/1‑149 GCTCGATCCGCCGATTGGAGTCGGCGCTGGGCACCGCCTTGTTCGTCAAGAGCCGAAAGGGCTATCTGCCGACTGACACCGCCCAGGCCTTGGCCGAGCAGGCCGAACGTGCCGAGCAGGCGCTGGAAGCAGCGCGCATTGCCATGACCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6047815‑6047967‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagtgCCGGCAGCAACAGGCTGTGCATCACCGCCTCCGTGCAGGTAAGGCGCACCGTGCCGCTGACCACCTGCTCGCCACTGGTCATGGCAATGCGCGCTGCTTCCAGCGCCTGCTCGGCACGTTCGGCCTGCTCGGCCAAGGCCTGGG < NC_002947/6048039‑6047896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |