New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3190461 =38 (0.530)3 (0.040) 3/256 NT 7.0% coding (189/1380 nt) PP_2799 class III aminotransferase
?NC_002947 3190500 = 43 (0.630)coding (150/1380 nt) PP_2799 class III aminotransferase

GAACACATGGTTCAGATCACCCGGCGCCAGCGCTGCCAACTTGGCGGCGAGCGCTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTGGGCCAGGTTGGTGTTGGGATGAAT  >  NC_002947/3190314‑3190604
                                                                                                                                                   |                                                                                                                                               
gaaCACATGGTTCAGATCACCCGGCGCCAGCGCTGCCAACTTGGCGGCGAGCGCTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTg                                                                                                                                                 >  4:415600/1‑148 (MQ=255)
 gcacccactcttcaaccgttcagaacgatctggcggcactcattcatcccaacaccaacctggcccagcaccgagaggtcgggccactcgtgatcgccagaggtgacggcgtccgggtctttgacgagcaaggcaatgcctacatcGaa                                                                                                                                               >  4:147831‑M1/147‑149 (MQ=255)
  cacccactcttcaaccgttcagaacgatctggcggcactcattcatcccaacaccaacctggcccagcaccgagaggtcgggccactcgtgatcgccagaggtgacggcgtccgggtctttgacgagcaaggcaatgcctacatcGAAg                                                                                                                                              <  4:422404‑M1/4‑1 (MQ=255)
    acaTGGTTCAGATCACCCGGCGCCAGCGCTGCCAACTTGGCGGCGAGCGCTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGCGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGcc                                                                                                                                            >  7:85138/1‑149 (MQ=255)
         gTTCAGATCACCCGGCGCCAGCGCTGCCAACTTGGCGGCGAGCGCTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAAt                                                                                                                                        <  8:358215/148‑1 (MQ=255)
         gTTCAGATCACCCGGCGCCAGCGCTGCCAACTTGGCGGCGAGCGCTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATg                                                                                                                                       >  4:349578/1‑149 (MQ=255)
              gATCACCCGGCGCCAGCGCTGCCAACTTGGCGGCGAGCGCTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCcgcg                                                                                                                                  >  3:136225/1‑149 (MQ=255)
                      ggCGCCAGCGCTGCCAACTTGGCGGCGAGCGCTGCGGCAGGCGCTTTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAg                                                                                                                          <  4:211679/149‑1 (MQ=255)
                                           ttcatcccaacaccaacctggcccagcaccgagaggtcgggccactcgtgatcgccagaggtgacggcgtccgggtctttgacgagcaaggcaatgcctacatcGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTa                                                                                                     >  3:331116‑M1/105‑149 (MQ=255)
                                            cggcgAGCGGTGCGGCAGGCGCTTTTGTCTTGTGGCTGAAGCTGTGGTAGTATGGCTGTTGCTTGAACTGCTCGACGGCAGCATCGAGCAGGGGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGAGATGGCTTCGATGTAg                                                                                                    <  8:85138/149‑1 (MQ=255)
                                                gAGCGCTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCAt                                                                                                >  6:139233/1‑149 (MQ=255)
                                                gAGCGCTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCAt                                                                                                <  3:330311/149‑1 (MQ=255)
                                                 ccaacaccaacctggcccagcaccgagaggtcgggccactcgtgatcgccagaggtgacggcgtccgggtctttgacgagcaaggcaatgcctacatcGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGt                                                                                                      <  4:257823‑M1/44‑1 (MQ=255)
                                                 ccaacaccaacctggcccagcaccgagaggtcgggccactcgtgatcgccagaggtgacggcgtccgggtctttgacgagcaaggcaatgcctacatcGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGt                                                                                                      >  3:257823‑M1/99‑142 (MQ=255)
                                                   cgcTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGc                                                                                             <  3:415600/149‑1 (MQ=255)
                                                    gcTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGcc                                                                                            <  6:354352/149‑1 (MQ=255)
                                                           cAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCg                                                                                     <  3:349578/149‑1 (MQ=255)
                                                             ggCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGt                                                                                    >  1:111643/1‑148 (MQ=255)
                                                             ggCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTc                                                                                   <  2:111643/149‑1 (MQ=255)
                                                             ggCGCATTGGTCTTGTGGCTGAAGCTGTGCTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGAGCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTc                                                                                   <  5:387203/149‑1 (MQ=255)
                                                                gcATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCAtt                                                                                               >  6:20563/1‑134 (MQ=255)
                                                                gcATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCAtt                                                                                               <  5:20563/134‑1 (MQ=255)
                                                                      gTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCg                                                                          >  8:305086/1‑149 (MQ=255)
                                                                       tCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCATTGCTCGTCAAAGACCCg                                                                          >  2:322798/1‑148 (MQ=255)
                                                                               cTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTc                                                                 <  1:322798/149‑1 (MQ=255)
                                                                                tGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCg                                                                          <  4:125384/139‑1 (MQ=255)
                                                                                tGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCg                                                                          >  3:125384/1‑139 (MQ=255)
                                                                                tGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCa                                                                >  5:324481/1‑149 (MQ=255)
                                                                                       gtgGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTgg                                                         >  5:214791/1‑149 (MQ=255)
                                                                                        tgGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTgg                                                         <  7:305086/148‑1 (MQ=255)
                                                                                        tgGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACAAGGCTTCGATGTAGGCATTGCCTAGCTCGTCAAAGACCCGGACGACGTCACCTCTGGc                                                        >  5:281106/1‑149 (MQ=255)
                                                                                              tatggCAGTTGCTTGTACTGCTCGACGGCAGCATCGTCCAGGCGCTGTTCACTGAAGACCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCGTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCAc                                                  <  6:281106/146‑1 (MQ=255)
                                                                                                   cAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTg                                             <  5:139233/149‑1 (MQ=255)
                                                                                                     gTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGCCCCGGACGCCGTCACCTCTGGCGATCACGAGTGGc                                           >  6:414643/1‑149 (MQ=255)
                                                                                                         cTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTTGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGa                                       >  6:36232/1‑149 (MQ=255)
                                                                                                                   tCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTg                             >  6:436811/1‑149 (MQ=255)
                                                                                                                       cGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTgg                         <  8:283867/149‑1 (MQ=255)
                                                                                                                        ggCAGCATCGACCAGGCGCTGTTCACTGACGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTggg                        <  3:360842/149‑1 (MQ=255)
                                                                                                                        ggCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTggg                        <  6:214791/149‑1 (MQ=255)
                                                                                                                             caTCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTGGGCCAgg                   >  3:422404/1‑149 (MQ=255)
                                                                                                                               tCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTTGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTGGGCCAGGtt                 <  5:36232/149‑1 (MQ=255)
                                                                                                                                    cAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGCCCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGCCCTCTCGGTGCTGCGCCAGGTTGgagt            >  8:84909/1‑149 (MQ=255)
                                                                                                                                       gcgcTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTGGGCCAGGTTGGTGTTgg         >  8:100509/1‑149 (MQ=255)
                                                                                                                                             ttCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTGGGCCAGGTTGGTGTTGGGatgaa   >  5:395290/1‑149 (MQ=255)
                                                                                                                                                aCTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTGGGCCAGGTTGGTGTTGGGatgaat  >  7:56318/1‑147 (MQ=255)
                                                                                                                                                  tGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTGGGCCAGGTTg                >  3:313227/1‑131 (MQ=255)
                                                                                                                                                  tGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTGGGCCAGGTTg                <  4:313227/131‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
GAACACATGGTTCAGATCACCCGGCGCCAGCGCTGCCAACTTGGCGGCGAGCGCTGCGGCAGGCGCATTGGTCTTGTGGCTGAAGCTGTGGTAGTAGGGCAGTTGCTTGAACTGCTCGACGGCAGCATCGACCAGGCGCTGTTCACTGAAGCCCAATGCCGCGCTCCACAGGCCCGACATGGCTTCGATGTAGGCATTGCCTTGCTCGTCAAAGACCCGGACGCCGTCACCTCTGGCGATCACGAGTGGCCCGACCTCTCGGTGCTGGGCCAGGTTGGTGTTGGGATGAAT  >  NC_002947/3190314‑3190604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.