New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5734096 =	22 (0.310)	4 (0.060)	4/258	NT	14.0%	intergenic (‑122/+35)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	5734131 =	28 (0.410)					coding (1533/1533 nt)	hutH	histidine ammonia‑lyase

GCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGC‑GGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCG  >  NC_002947/5733950‑5734243                                                                                                                                                    |                                                                                                                                                     gcTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGGCCCCCCCCAACCCACAGGGGTGGTTGTTTTGAACAAAATTTTTTGGTGGCGGgcgcc                                                                                                                                                     >  5:271264/1‑148 (MQ=255)    caggcgcgccaggcgctgcgcagtgaggtgccgcactacgaccgtgaccgtttcttcgcgccggatatcgaaaaggccgtggacctgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaaCGccc                                                                                                                                                  <  2:326406‑M1/5‑1 (MQ=255)                               gtgccgcactacgaccgtgaccgtttcttcgcgccggatatcgaaaaggccgtggacctgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaaCGCCC‑CTA‑GGGCCGCCCAGCGGCCCCAGGGGc                                                                                                                     >  3:184098‑M1/118‑149 (MQ=255)                                  cgcactacgaccgtgaccgtttcttcgcgccggatatcgaaaaggccgtggacctgttggccaagggtagtctgaccggcttgctgccggcgggtgtcactgccaagcctgtaaCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCg                                                                                                                    >  1:326406‑M1/115‑149 (MQ=255)                                               tgtgGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGC‑GGGCACGCCCGCTCCCACTGGGGTTGGTGTTTTGCACCTACTTCTGTGGTAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGc                                                                                                      <  5:133694/148‑1 (MQ=255)                                                        gagaTTCAGGGGGCTGCTGCGCAGCCCCTTCGC‑GGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACccg                                                                                            >  7:20187/1‑149 (MQ=255)                                                                          aaaaggccgtggacctgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaaCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑t                                                                                                                  >  8:279043‑M1/75‑110 (MQ=255)                                                                          aaaaggccgtggacctgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaaCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑t                                                                                                                  <  7:279043‑M1/36‑1 (MQ=255)                                                                                   cTTCGC‑GGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCt                                                                 >  4:368453/1‑149 (MQ=255)                                                                                                gCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGt                                                     <  8:20187/149‑1 (MQ=255)                                                                                                  ccGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTc                                                    >  6:142228/1‑148 (MQ=255)                                                                                                     cTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACg                                                >  5:79249/1‑149 (MQ=255)                                                                                                      tCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCTCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACgg                                               >  4:55792/1‑149 (MQ=255)                                                                                                      tCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACgg                                               >  1:228345/1‑149 (MQ=255)                                                                                                          acaGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTTGCCAACAGGTCCACGGCCtt                                           >  8:390140/1‑149 (MQ=255)                                                                                                          acaGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGc                                              <  4:29221/146‑1 (MQ=255)                                                                                                          acaGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGc                                              >  3:29221/1‑146 (MQ=255)                                                                                                              gggATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTc                                        >  6:86878/1‑148 (MQ=255)                                                                                                                 aTGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGata                                    >  1:361674/1‑149 (MQ=255)                                                                                                                           gCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTTGCAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGgccc                            >  1:348583/1‑146 (MQ=255)                                                                                                                           gCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGcgcg                           >  5:160886/1‑148 (MQ=255)                                                                                                                               cTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCgaagaa                      <  2:361674/149‑1 (MQ=255)                                                                                                                                 aCTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCACAGGGGCC‑TTTCAGGCATTGCAGTACACCCGCCGGCAGCAACCCCGTCAGACTACCCTTGGCCAACAGGTACACGGCCTTTTCGAAATCCCGCGCGAAGAAac                    >  1:89509/1‑149 (MQ=255)                                                                                                                                   ttCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGgcagc                                                                                    >  6:248148/1‑83 (MQ=255)                                                                                                                                   ttCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGgcagc                                                                                    <  5:248148/83‑1 (MQ=255)                                                                                                                                    tCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCACCAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAacggt                 >  5:266006/1‑149 (MQ=255)                                                                                                                                            aGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCg         <  7:390140/149‑1 (MQ=255)                                                                                                                                              cGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCg         >  2:182882/1‑147 (MQ=255)                                                                                                                                                 gcgcgcCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTg    <  2:228345/149‑1 (MQ=255)                                                                                                                                                   gcgcCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCg  >  8:40292/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGC‑GGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGTACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCG  >  NC_002947/5733950‑5734243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.