New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5734096 =	22 (0.310)	4 (0.060)	4/258	NT	14.0%	intergenic (‑122/+35)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	5734131 =	28 (0.410)					coding (1533/1533 nt)	hutH	histidine ammonia‑lyase

TGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCAGCGCCTGGCGCGCCTGCTC  >  NC_002947/5733996‑5734277                                                                                                                                         |                                                                                                                                                    tgtgGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACTGGGGTTGGTGTTTTGCACCTACTTCTGTGGTAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGc                                                                                                                                         <  5:133694/148‑1 (MQ=255)          gagaTTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACccg                                                                                                                              >  7:20187/1‑149 (MQ=255)                           aaaaggccgtggacctgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaaCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑t                                                                                                                                                     <  7:279043‑M1/36‑1 (MQ=255)                           aaaaggccgtggacctgttggccaagggtagtctgaccggcttgctgccggcgggtgtactgccaagcctgtaaCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑t                                                                                                                                                     >  8:279043‑M1/75‑110 (MQ=255)                                     cTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCt                                                                                                   >  4:368453/1‑149 (MQ=255)                                                 gCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGt                                                                                       <  8:20187/149‑1 (MQ=255)                                                   ccGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTc                                                                                      >  6:142228/1‑148 (MQ=255)                                                      cTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACg                                                                                  >  5:79249/1‑149 (MQ=255)                                                       tCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCTCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACgg                                                                                 >  4:55792/1‑149 (MQ=255)                                                       tCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACgg                                                                                 >  1:228345/1‑149 (MQ=255)                                                           acaGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTTGCCAACAGGTCCACGGCCtt                                                                             >  8:390140/1‑149 (MQ=255)                                                           acaGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGc                                                                                >  3:29221/1‑146 (MQ=255)                                                           acaGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGc                                                                                <  4:29221/146‑1 (MQ=255)                                                               gggATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTc                                                                          >  6:86878/1‑148 (MQ=255)                                                                  aTGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGata                                                                      >  1:361674/1‑149 (MQ=255)                                                                            gCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCGTTTGCAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGgccc                                                              >  1:348583/1‑146 (MQ=255)                                                                            gCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGcgcg                                                             >  5:160886/1‑148 (MQ=255)                                                                                cTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCgaagaa                                                        <  2:361674/149‑1 (MQ=255)                                                                                  aCTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCACAGGGGCC‑TTTCAGGCATTGCAGT‑ACACCCGCCGGCAGCAACCCCGTCAGACTACCCTTGGCCAACAGGTACACGGCCTTTTCGAAATCCCGCGCGAAGAAac                                                      >  1:89509/1‑149 (MQ=255)                                                                                    ttCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGgcagc                                                                                                                      <  5:248148/83‑1 (MQ=255)                                                                                    ttCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGgcagc                                                                                                                      >  6:248148/1‑83 (MQ=255)                                                                                     tCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCACCAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAacggt                                                   >  5:266006/1‑149 (MQ=255)                                                                                             aGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCg                                           <  7:390140/149‑1 (MQ=255)                                                                                               cGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCg                                           >  2:182882/1‑147 (MQ=255)                                                                                                  gcgcgcCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTg                                      <  2:228345/149‑1 (MQ=255)                                                                                                    gcgcCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCg                                    >  8:40292/1‑149 (MQ=255)                                                                                                     acgcccctggggccgctgggcggcccttcgcgggcgTTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCtttt                                                                           <  7:279043‑M2/74‑1 (MQ=255)                                                                                                     acgcccctggggccgctgggcggcccttcgcgggcgTTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCtttt                                                                           >  8:279043‑M2/37‑110 (MQ=255)                                                                                                      cgcccctggggccgctgggcggcccttcgcgggcgTTACAGGCTTGGCAGTGACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCg                                    >  1:326406‑M2/36‑149 (MQ=255)                                                                                                      GCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGc                                  <  6:321255‑M1/149‑1 (MQ=255)                                                                                                         gcccctggggccgctgggcggccctaggggcgTTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCAc                                >  3:184098‑M2/33‑149 (MQ=255)                                                                                                                  ccgccCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGCCTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTgcg                       >  6:250853/1‑148 (MQ=255)                                                                                                                    gccCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCAg                    >  4:424658/1‑149 (MQ=255)                                                                                                                          cGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCAGCGCCTg              <  5:86878/149‑1 (MQ=255)                                                                                                                            gCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCAGCGCCTGgc            >  5:276387/1‑149 (MQ=255)                                                                                                                              cccAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCAGCGCCTGgcgc          >  8:165106/1‑149 (MQ=255)                                                                                                                                    gggcgTTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCAGCGCCTGGCGCGCCTg     <  2:326406‑M2/144‑1 (MQ=255)                                                                                                                                         ttACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCAGCGCCTGGCGCGCCTGCTc  >  5:96309/1‑147 (MQ=255)                                                                                                                                         |                                                                                                                                                    TGTGGTCGTGAGATTCAGGGGGCTGCTGCGCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGGGGATGGTGTTTTGCACCTACTTCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCGCCCAGCGGCCCCAGGGGCG‑TTACAGGCTTGGCAGT‑ACACCCGCCGGCAGCAAGCCGGTCAGACTACCCTTGGCCAACAGGTCCACGGCCTTTTCGATATCCGGCGCGAAGAAACGGTCACGGTCGTAGTGCGGCACCTCACTGCGCAGCGCCTGGCGCGCCTGCTC  >  NC_002947/5733996‑5734277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.