| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5870261 = | 33 (0.460) | 3 (0.050) | 3/210 | NT | 12.3% | intergenic (+22/+112) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator |
| ? | NC_002947 | 5870354 = | 17 (0.300) | intergenic (+115/+19) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator | |||||
CAGCCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAG > NC_002947/5870113‑5870378 | cagccagAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTGTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCgg < 6:148119/149‑1 (MQ=255) caagtcactgctggccgatgccttgagccatgacaaccctcaggtgatccacagctcgctgcaactggccctgaagcaccgtgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGc > 7:150612‑M1/147‑149 (MQ=255) caaggaactgctggccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGc < 7:189626‑M1/3‑1 (MQ=255) caaggaactgctggccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGc > 4:264702‑M1/147‑149 (MQ=255) caaggaactgctggccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGc < 3:264702‑M1/3‑1 (MQ=255) aaggaactgctggccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGcc > 5:35564‑M1/146‑149 (MQ=255) aaggaactgctggccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGcc < 3:205380‑M1/4‑1 (MQ=255) ggaactgctggccgaggccttgagccatgacaacccgcaggttatccacagctctctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctttgagggtgatgctgtttgtgccGGCctc > 2:423753‑M1/144‑149 (MQ=255) aactgctggccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCtt > 2:15046‑M1/142‑149 (MQ=255) ctggccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCgg < 5:335245‑M1/13‑1 (MQ=255) gggACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCggg < 2:216546/149‑1 (MQ=255) gccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGt > 4:205380‑M1/134‑148 (MQ=255) gccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGt > 7:96353‑M1/134‑148 (MQ=255) gACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTcgc < 7:313898/144‑1 (MQ=255) gACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTcgc > 8:313898/1‑144 (MQ=255) gaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAAc < 6:323463‑M1/19‑1 (MQ=255) gaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAAc > 1:158585‑M1/131‑149 (MQ=255) ccGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAAc > 4:125946/1‑149 (MQ=255) ccGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAAc < 7:220016/149‑1 (MQ=255) ccGGGCGAGCACAGTGCTGATTCTGGATGATCAGGGGCAAAGGAGGCTGGTTGAGCGCAGTTTCGGGCCATTTGGCGGGCATTTGGGGGAAATTGACTTGTTGGTCTGAGTATTTCATGTAGTCTGTTAGGGCCTCTACGCGGGTGAAc > 7:299519/1‑149 (MQ=255) ggccttgagccatgacaacccgcacgttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAAccc > 6:55119‑M1/129‑149 (MQ=255) gCGAGCACAGTGCTGTTTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGTGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGc < 7:150413/149‑1 (MQ=255) gCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGc > 5:178617/1‑149 (MQ=255) cttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCt < 4:171260‑M1/24‑1 (MQ=255) cttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCt < 8:310546‑M1/24‑1 (MQ=255) gtgccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTc > 8:204780‑M1/123‑147 (MQ=255) gccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCgg > 2:89834‑M1/121‑133 (MQ=255) gccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCgg > 8:307523‑M1/121‑133 (MQ=255) gccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCgg < 7:307523‑M1/13‑1 (MQ=255) gccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTa > 7:310546‑M1/121‑148 (MQ=255) gATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCt > 4:195724/1‑149 (MQ=255) aacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgttcgggtgatgctgtttgtgccGGc > 7:66495‑M1/113‑115 (MQ=255) aacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgttagggtgatgctgtttgtgccGGc < 8:66495‑M1/3‑1 (MQ=255) tgGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGt < 6:178617/148‑1 (MQ=255) tgGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGt < 3:125946/148‑1 (MQ=255) ggATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGGCCTGGGtg > 6:104379/1‑147 (MQ=255) gatgatCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTcc < 7:360453/148‑1 (MQ=255) atgatCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCaa < 5:128041/149‑1 (MQ=255) tCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAAccc > 6:393175/1‑148 (MQ=255) aGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCa < 5:3943/148‑1 (MQ=255) tggCATAGGCGGCTGGTTGAGCGTAGTTTGGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGAt < 8:354543/148‑1 (MQ=255) gggCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGAt > 5:342980/1‑149 (MQ=255) gggCAAAGGAGGCTGTTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGAt < 5:176508/149‑1 (MQ=255) aGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGAtgtgtg > 6:286110/1‑148 (MQ=255) gctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCt < 4:33830‑M1/27‑1 (MQ=255) gctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCt > 3:33830‑M1/90‑116 (MQ=255) ttGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTGCAACCCCAGATGTGTGTACGTGGTAgg > 3:95993/1‑149 (MQ=255) aGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGc < 5:63428/149‑1 (MQ=255) gcgcAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGc < 5:286110/148‑1 (MQ=255) tgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTCCAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGa > 1:83935‑M1/76‑145 (MQ=255) tgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGa < 2:83935‑M1/70‑1 (MQ=255) cgcAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCgg < 5:393175/149‑1 (MQ=255) cgcAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCgg < 6:40892/149‑1 (MQ=255) cgcAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCgg < 3:195724/149‑1 (MQ=255) gctgTTTCGTGGATTTTGGCGGGAATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGAtgtgtg < 4:372621/129‑1 (MQ=37) gcAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGAtgtgtg > 3:372621/1‑132 (MQ=255) aagaaccttgggttggcgcggatgattgggcctgtggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCgg > 5:249179‑M1/74‑147 (MQ=255) gTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTc < 1:413394/149‑1 (MQ=255) ttGGCGGGCATTTGGGGGAAATTGAGTTGTTGGGCTGAGTATTTGATGTTGTCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAaga < 5:104379/148‑1 (MQ=255) gCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAg < 7:296246/124‑1 (MQ=255) gCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAg > 8:296246/1‑124 (MQ=255) ttgGTCTGATTTTTTTATGTTGGCTGTTGGGGCCTCTGCGCGGGGGAACCCGCGCCTACACCGGCCGGGGGCCAACCCCAGATGTGTGTCCGGGGTCGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAg < 6:342980/148‑1 (MQ=255) | CAGCCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAG > NC_002947/5870113‑5870378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |