New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5870261 =	33 (0.460)	3 (0.050)	3/210	NT	12.3%	intergenic (+22/+112)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5870354 =	17 (0.300)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator

TTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGCC  >  NC_002947/5870231‑5870502                                                                                                                            |                                                                                                                                                     ttgGTCTGATTTTTTTATGTTGGCTGTTGGGGCCTCTGCGCGGGGGAACCCGCGCCTACACCGGCCGGGGGCCAACCCCAGATGTGTGTCCGGGGTCGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAg                                                                                                                              <  6:342980/148‑1 (MQ=255)                                    CTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTAAGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCACACAGGGGTTTATTAGCCCCAGCCCCAATCAACCGCGCCaa                                                                                          <  8:189626‑M1/149‑1 (MQ=255)                                              GAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttc                                                                                <  2:29643‑M1/149‑1 (MQ=255)                                                  ccgctcctaccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCACAGGCCCAATCATCCGCGCCAACCCAAGGttctt                                                                              >  5:249179‑M2/75‑147 (MQ=255)                                                  CCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttctt                                                                              <  4:402860‑M1/147‑1 (MQ=255)                                                    GCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAgg                                                                          <  4:225213‑M1/149‑1 (MQ=255)                                                      tcctaccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCa                                                                            <  2:83935‑M2/75‑1 (MQ=255)                                                      tcctaccacgtacacacatctggggttggacccaggccgttggaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCa                                                                            >  1:83935‑M2/71‑145 (MQ=255)                                                        CTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGc                                                                        <  5:154557‑M1/147‑1 (MQ=255)                                                           CAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGtt                                                                   <  3:126739‑M1/149‑1 (MQ=255)                                                           CAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGtt                                                                   >  3:225213‑M1/1‑149 (MQ=255)                                                            aaCGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTg                                                                  >  6:273210/1‑149 (MQ=255)                                                             aCGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCAACCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTg                                                                  >  6:335245/1‑148 (MQ=255)                                                                  cTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGc                                                              >  1:240860/1‑147 (MQ=255)                                                                    gggTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGc                                                          >  8:401121/1‑149 (MQ=255)                                                                        ccAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCtgtg                                                      >  6:169280/1‑149 (MQ=255)                                                                            ccccAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGAt                                                   >  3:171260/1‑148 (MQ=255)                                                                             cccAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCCAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATaa                                                 >  8:328061/1‑149 (MQ=255)                                                                                  aTGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGc                                            <  5:273210/149‑1 (MQ=255)                                                                                     tgtgtACGTGTTAGGAGCGGGTTCACGCGCGAAGAGGCCGGCACATACTGGATCACCGTCACAGGGTTTTATTAGCCCCAGGCCCAATCTTGCGCGCCAACCCAAGGTTCTTCAGGGCGAGTTGCTGCGAGCTATGGATAACCTGCgg                                          <  4:126739/148‑1 (MQ=255)                                                                                      gtgtACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGt                                        >  3:114747/1‑149 (MQ=255)                                                                                      gtgtACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGt                                        >  4:57329/1‑149 (MQ=255)                                                                                        gtACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGtt                                       <  3:57329/148‑1 (MQ=255)                                                                                         tACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGt                                     >  5:409403/1‑149 (MQ=255)                                                                                         tACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGt                                     >  5:154198/1‑149 (MQ=255)                                                                                         tACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGt                                     >  5:323463/1‑149 (MQ=255)                                                                                         tACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGt                                     >  5:357996/1‑149 (MQ=255)                                                                                          aCGTGGTAGGAGCGGTGTCACCCGCGAAGAGGCCGTCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGTCCAGTTGCAGCGAGCTGTGGATAACCTGCTGGtt                                       <  2:391035/146‑1 (MQ=255)                                                                                          aCGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGtt                                       >  1:391035/1‑146 (MQ=255)                                                                                            gTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGtt                                       >  1:15675/1‑144 (MQ=255)                                                                                            gTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGtt                                       <  2:15675/144‑1 (MQ=255)                                                                                              ggTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGCGTTGTCATgg                                >  7:150792/1‑149 (MQ=255)                                                                                                taggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGc                               >  7:310546‑M2/29‑148 (MQ=255)                                                                                                 aggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGc                                                              <  4:33830‑M2/89‑1 (MQ=255)                                                                                                 aggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGc                                                              >  3:33830‑M2/28‑116 (MQ=255)                                                                                                   gagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATggcac                             >  8:204780‑M2/26‑145 (MQ=255)                                                                                                    agcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAg                          <  8:310546‑M2/125‑1 (MQ=255)                                                                                                    agcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAg                          <  4:171260‑M2/125‑1 (MQ=255)                                                                                                       gggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACGTGCGGGTTGTCATGGCTCAAGGcc                       >  6:55119‑M2/22‑149 (MQ=255)                                                                                                         gttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTc                     >  1:158585‑M2/20‑149 (MQ=255)                                                                                                         gttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTc                     <  6:323463‑M2/130‑1 (MQ=255)                                                                                                             acccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGc                  >  4:205380‑M2/16‑148 (MQ=255)                                                                                                             acccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGc                  >  7:96353‑M2/16‑148 (MQ=255)                                                                                                               ccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGc                               <  7:307523‑M2/120‑1 (MQ=255)                                                                                                               ccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGc                               >  2:89834‑M2/14‑133 (MQ=255)                                                                                                               ccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGc                               >  8:307523‑M2/14‑133 (MQ=255)                                                                                                               ccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCcag               <  5:335245‑M2/136‑1 (MQ=255)                                                                                                                    aagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGtt          >  2:15046‑M2/9‑149 (MQ=255)                                                                                                                      gaggccGGCACAAACAGCATCACCCTCAAAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGAGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTcc        >  2:423753‑M2/7‑149 (MQ=255)                                                                                                                        ggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCtt      >  5:35564‑M2/5‑149 (MQ=255)                                                                                                                        ggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCtt      <  3:205380‑M2/145‑1 (MQ=255)                                                                                                                         gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCACGGTGCTTCAGGGCCAGTTGCAGCGAGCTGTGGATCACCTGAGGGTTGTCATGGCTCAAGGCATCGGCCAGCAGTGACTTg     >  7:150612‑M2/4‑149 (MQ=255)                                                                                                                         gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTg     >  4:264702‑M2/4‑149 (MQ=255)                                                                                                                         gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTg     <  7:189626‑M2/146‑1 (MQ=255)                                                                                                                         gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTg     <  3:264702‑M2/146‑1 (MQ=255)                                                                                                                         gccGGCACAAACAGCATCACCCTAACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGtt                                       <  8:66495‑M2/112‑1 (MQ=255)                                                                                                                         gccGGCACAAACAGCATCACCCGAACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGtt                                       >  7:66495‑M2/4‑115 (MQ=255)                                                                                                                            ggCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGcc  >  1:436653/1‑149 (MQ=255)                                                                                                                            ggCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGcc  <  6:154198/149‑1 (MQ=255)                                                                                                                            |                                                                                                                                                     TTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGCC  >  NC_002947/5870231‑5870502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.