| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 196893 = | NA (NA) | 4 (0.060) | 4/258 | NT | 13.3% | coding (2399/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 196920 = | 27 (0.380) | coding (2426/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
GAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAT > NC_002947/196772‑197068 | actctgacggtcgaagcgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctggggcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcac < 7:383254‑M2/1‑1 (MQ=255)acgctgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatgggttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcac > 5:27146‑M2/149‑149 (MQ=255) cgctgacggtctaaccgttgttgtagacgttattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCg < 1:369365‑M2/2‑1 (MQ=255) cgctgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCg < 3:217820‑M2/2‑1 (MQ=255) cgctgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCg < 4:175731‑M2/2‑1 (MQ=255) cgctgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCg < 4:73629‑M2/2‑1 (MQ=255) cgctgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCg < 2:108956‑M2/2‑1 (MQ=255) cgctgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCg < 7:206034‑M2/2‑1 (MQ=255) cgctgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCg < 7:239816‑M2/2‑1 (MQ=255) gctgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCgg > 2:142697‑M2/147‑149 (MQ=255) gctgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCgg < 8:54285‑M2/3‑1 (MQ=255) tgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCGGTg > 7:255463‑M2/145‑149 (MQ=255) tgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCGGTg < 4:422073‑M2/5‑1 (MQ=255) tgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCGGTg > 4:317883‑M2/145‑149 (MQ=255) tgacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCGGTg < 2:84991‑M2/5‑1 (MQ=255) gatGAACCCGAACCCGACGACGGCTCAGACCACGATAAACGAATAGGTCGATTCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATAACATACACAGTGACCTTGAGCAATCCTGCCCAGACGCCGGTGa < 8:198251/147‑1 (MQ=11) gacggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctaagggtcaCGGTg > 6:43231‑M2/144‑148 (MQ=255) gCTGACCCCGAACCCGACGCAGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGa < 8:72328/149‑1 (MQ=17) cTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGa > 5:81993/1‑148 (MQ=32) tGACCCCAAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGa > 1:164958/1‑147 (MQ=14) ggtcgaaccgttgttgtagacgtcattcgccggggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcacggtctag < 3:254407‑M2/8‑5 (MQ=255) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCTGGTGACAGt < 2:98959/149‑1 (MQ=17) aCCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 5:34070/147‑1 (MQ=11) aCCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 5:27810/147‑1 (MQ=11) aCCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 3:376384/147‑1 (MQ=11) aCCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt > 6:329863/1‑149 (MQ=17) ccccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt < 6:239059/148‑1 (MQ=32) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGACCAGACGCCGGTGCAAGTGa > 5:433789/1‑149 (MQ=12) cccGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 1:433329/1‑149 (MQ=17) ccGAACCCGCCGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc < 5:262892/149‑1 (MQ=17) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 2:19700/1‑149 (MQ=32) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 4:18775/1‑149 (MQ=32) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc < 1:68028/149‑1 (MQ=32) ccGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc < 5:89790/149‑1 (MQ=17) cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc < 1:402366/149‑1 (MQ=32) cGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc < 8:69852/149‑1 (MQ=17) aaCCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTGACCGAAGGCGGCGATATAACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCt > 1:140724/1‑149 (MQ=11) gggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCg > 5:194051‑M2/109‑110 (MQ=255) gggtctggaaatcgacgctgccctgggtcttgccggcttcaacggtaatggtttggccgttggacagggtcactgtcaccggcgtctgggcaggattgctcagggtcaCg < 6:194051‑M2/2‑1 (MQ=255) ctgtcaccggcgtctgggcaggattgctcagggtcaCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt < 4:369088‑M2/107‑1 (MQ=255) ctgtcaccggcgtctgggcaggattgctcagggtcaCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt > 3:369088‑M2/37‑143 (MQ=255) gtcaccggcgtctgggcaggattgctcagggtcaCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑Gt > 2:27531‑M2/35‑149 (MQ=255) tcaccggcgtctgggcaggattgctcagggtcaCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTc > 8:23777‑M2/34‑149 (MQ=255) cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCcaca < 3:140759/149‑1 (MQ=11) cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCCACC‑GTCAGCGTCACCATCGAGAACGCcaca < 1:37404/149‑1 (MQ=11) ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAg > 1:198781/1‑149 (MQ=31) ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAg > 6:174387/1‑149 (MQ=31) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAgg > 1:236309/1‑149 (MQ=32) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAgg < 8:198758/149‑1 (MQ=32) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAgg > 2:55711/1‑149 (MQ=32) gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAGGCg < 4:301368/149‑1 (MQ=32) gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAGGCg < 8:147370/149‑1 (MQ=32) gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAGGCg < 3:162222/149‑1 (MQ=32) aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAGGCgg < 5:386613/149‑1 (MQ=32) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAGGCGGTa < 6:401779/149‑1 (MQ=33) ccGGTGACAGTGACCCTGTCCAACTGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGGTCAGCGTCACCATCGAGAACGCCACAGGCGGTa < 1:53929/149‑1 (MQ=16) CGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 7:299421‑M2/92‑1 (MQ=255) CGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 8:299421‑M2/1‑92 (MQ=255) CGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAt < 3:154573‑M2/149‑1 (MQ=255) | GAACAGCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACC‑GTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAT > NC_002947/196772‑197068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |