New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2295775 =	51 (0.710)	10 (0.170)	9/220	NT	24.2%	intergenic (+21/+112)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	2295860 =	21 (0.360)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein

CGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGCGC  >  NC_002947/2295712‑2296004                                                                                                                                                     |                                                                                                                                                   cgcCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCacac                                                                                                                                                    >  4:67999/1‑149 (MQ=255)  gcCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACg                                                                                                                                                   >  1:86493/1‑149 (MQ=255)        agctgttcaaggaaatcatggtccgatgattaaacatcgggctgcacttgggtcctTGTGGGAGCGGGCATGCCCGCTAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGAccc                                                                                                                                              >  8:178240‑M1/57‑148 (MQ=255)            aTGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCAtgtg                                                                                                                                         <  2:86493/149‑1 (MQ=255)                  cccTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTAGCGGGCATGCCCGCTCCCACACGGACCCAAGTGCAGccc                                                                                                                                   >  8:38557/1‑149 (MQ=255)                       aGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCTAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGAt                                                                                                                                <  2:106152/147‑1 (MQ=255)                            cAAGCACCACCACTGATCTGGCTGGTGTGAGGTCCTGGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGGGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAAt                                                                                                                         <  7:38557/149‑1 (MQ=255)                             aaGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGCTGCCCCCTTCGCCGGCAAGCCCGCTCCCACCCGGACCCAAGTGCCGCCCGCAGATTAAt                                                                                                                         >  8:193047/1‑148 (MQ=25)                                     ccacTGATCTGGCTTGTGTGAGGACCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACAGCGGTGCCCGCTTCGCCGGCCTGCCAGCTCCCACACGGCCCCATGTGCAGGCCGATGTTTAATCAGCGGAc                                                                                                                 >  5:444993/1‑148 (MQ=37)                                                gCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCCCCGCGGTGCCCGCATCCCCGGCATGCCCGCGCCCCCACGGCCCCATTTGCAGCCCGATGTTTAATCAGCGGCCCATGCTTGccgt                                                                                                     >  7:90688/1‑147 (MQ=25)                                                gCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGcc                                                                                                       <  8:107284/147‑1 (MQ=255)                                                 cTTGTGTGAGGTCCTTGTGGGAGCGGGCAGGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTg                                                                                                    <  5:267617/149‑1 (MQ=255)                                                       tgAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATAAGCGGCCCATGATTTCCTTGAAAAg                                                                                               >  4:84497/1‑148 (MQ=255)                                                         gggtccgtgtgggagcgggcatgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttagcgggcatgcccgctcccacaAGGACCCAAGTGCAGCCCGATGTTTAATCATCGGACCATGATTTCCTTGAACAGCt                                                                                             >  8:178240‑M2/93‑148 (MQ=255)                                                         aGGCCCTTGGGGTAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTc                                                                                            <  7:193047/149‑1 (MQ=255)                                                              cTTGTGGGAGCGGGCATGCCCTGGAACTCCGGCAGTGCGGGTGCCTTCCACCGCGGTGCCCGCTTCGCGGGCATGCCGGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGaa                                                                                        <  6:444993/148‑1 (MQ=255)                                                                       GCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATTCCCGCTCCCACACGGACACATGTGCAGCCCGATGTTTAATAAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCAcc                                                                            <  6:82077‑M1/149‑1 (MQ=255)                                                                          ggcatgccggcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaAGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCt                                                                         <  7:178240‑M2/74‑1 (MQ=255)                                                                          GGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCCTGCCCGCTCCCACACGGCCCCATGTGCAGGCCGATGGTTTATCAGCGGGCCATGATTGGCTTGAACAGCTCCGCAGCCA‑‑GCCACCCCt                                                                         <  5:31539‑M1/149‑1 (MQ=255)                                                                           gcatgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaAGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTc                                                                        >  1:117028‑M2/75‑149 (MQ=255)                                                                             atgcccgagaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaAGGACCTATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTc                                                                        >  8:311410‑M2/73‑147 (MQ=255)                                                                               gcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttagcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGTGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTccagc                                                                    >  5:162869‑M2/71‑149 (MQ=255)                                                                                cccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGcc                                                                                                                                    >  2:69810‑M2/70‑86 (MQ=255)                                                                                cccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGcc                                                                                                                                    <  1:69810‑M2/17‑1 (MQ=255)                                                                                CCCGCTAACACCGGCAGAGCCGGTGCCATCCACCGCGTTGCCCGCTTCGCGGGCTTGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTccagcc                                                                   >  1:177157‑M1/1‑149 (MQ=255)                                                                                 ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCctccagcaa                                                                  >  2:353113‑M2/69‑147 (MQ=255)                                                                                 ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTccagcca                                                                  >  4:121668‑M2/69‑149 (MQ=255)                                                                                        cacCGGCTCTGCCGGTGTCATCCACCGCGGTGCCCGCTTAGCGGGCATGCCCGCTCCCACACGGACCCATGTTCAGCCCGATGTTTAATAAGCGGACCATGATTGCCTTGAACAGCACCGAAGCCA‑‑GCCACCCCACCAGCCCGCTACg                                                            >  4:336332/1‑148 (MQ=255)                                                                                               ccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGTGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACAcgcg                                                    <  6:162869‑M2/95‑1 (MQ=255)                                                                                                gagCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCgg                                                   <  4:297406/149‑1 (MQ=255)                                                                                                     gtgcccAACCCCCGCGGGGCCGGCTTCGGGGGATTGCCGGCCCCAACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAg                                              <  2:197558/145‑1 (MQ=255)                                                                                                       tGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAgcc                                            <  3:67999/149‑1 (MQ=255)                                                                                                           aTCCACCGCGGTGCCCGCTTAGCGGGCCTGCCCGCTCCCACCCGGACCCATGTGCAGCCCGCTGTTTTATAAGCGGACCATGATTGCCATGAAAAGCTCCCAAGCCC‑‑GCCCCCCCACCAGCCAACACCGCCCCCCCGGCTAAaccccca                                        >  6:265936/1‑148 (MQ=255)                                                                                                           aTCCACCGCGGTGCCCGCGTCGCGGGCATGCCCGCGCCCACACCGACCCAAGTGCAGCCCGCTGTTTAATCAGCGGACCATGATTGGCTTGAAAAGCACCGAAGCCA‑‑GCCACCCCGCCCGCCACCACCCCACACCCGGAAAAgccgcca                                        >  8:357944/1‑148 (MQ=255)                                                                                                              cACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCgg                                     <  5:265936/149‑1 (MQ=255)                                                                                                                ccGCGGTGCCCGCGTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCg                                   <  7:174643/149‑1 (MQ=255)                                                                                                                       gCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACt                            >  3:425019/1‑149 (MQ=255)                                                                                                                        cccGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGGGCAGCCCGAGGGTTAAGCCGCGGACCAGGATGGCCGTGCACAGCTCCGCCGCCA‑‑GCCCCCCCTCCCGCCCGCTCCGCCCACGCGGATAAGCCGCCTCGGCGAACCCCTg                           >  5:208864/1‑149 (MQ=255)                                                                                                                         ccGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGc                          <  3:14697/149‑1 (MQ=255)                                                                                                                          cGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGGCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGAGAACCCGCGTCGGCGAACCACTGCg                         >  2:368495/1‑149 (MQ=255)                                                                                                                                gcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGa                   >  1:217354‑M2/22‑149 (MQ=255)                                                                                                                                   ggcatgcccgctcccaccCGGACCCCTGTGCAGCCCGATGTTTCATCAGCGGACCATGCTTGCCTTGAACAGCTCCGAAGCCA‑‑GCCCCCCCTCCCGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGAccc                <  6:208864‑M2/131‑1 (MQ=255)                                                                                                                                   ggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGAccc                <  3:336332‑M2/131‑1 (MQ=255)                                                                                                                                     catgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCg              <  3:121668‑M2/133‑1 (MQ=255)                                                                                                                                     catgcccgctcccacaAGGACCTATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCg              <  7:311410‑M2/133‑1 (MQ=255)                                                                                                                                       tgcccgctcccacaCGGACCCATGTGCATCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAATACACTTCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCg              <  1:353113‑M2/135‑1 (MQ=255)                                                                                                                                          ccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTg                           <  7:379527‑M2/120‑1 (MQ=255)                                                                                                                                          ccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTg                           >  8:379527‑M2/12‑131 (MQ=255)                                                                                                                                          ccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCaaa         <  4:425019‑M2/138‑1 (MQ=255)                                                                                                                                            gctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACt       >  1:298745‑M2/10‑149 (MQ=255)                                                                                                                                            gctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTACGAAGCCA‑‑GCCACACATCCAGCCAGCTCCGCACACGAGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACt       >  2:144281‑M2/10‑149 (MQ=255)                                                                                                                                             ctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCg              >  3:240029‑M2/9‑141 (MQ=255)                                                                                                                                             ctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCg              <  4:240029‑M2/133‑1 (MQ=255)                                                                                                                                                ccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGgcg   >  7:307659‑M2/6‑149 (MQ=255)                                                                                                                                                caacacTGACCCATGTGCAGCCCGATGTATAAACAGCGGACCATGAATACATTGAACAGCTCCCAAACCA‑‑GCCACCACTCCAGCCAGCTCCGCACACCCGCATAAGCCGCCTCGCCGAACAACTCCGGTTCGACCCCGGCAAACttccg   >  8:397967/3‑145 (MQ=255)                                                                                                                                                 cacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGgcgc  <  5:269388‑M2/145‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCA‑‑GCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGCGC  >  NC_002947/2295712‑2296004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.