New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2361932	62 (0.870)	5 (0.070)	5/250	NT	9.2%	coding (1945/2724 nt)	PP_2076	hypothetical protein
	?	NC_002947	3838247 =	41 (0.610)					coding (1842/2673 nt)	PP_3388	hypothetical protein

GGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGC  >  NC_002947/3838102‑3838394                                                                                                                                                   |                                                                                                                                                    ggcAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACaa                                                                                                                                                  >  4:296922/1‑149 (MQ=37) ggcAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGAGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACaa                                                                                                                                                  <  1:10607/149‑1 (MQ=37)   cAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAAcg                                                                                                                                                <  4:311952/149‑1 (MQ=37)         ctgcGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCca                                                                                                                                                     >  1:330459/1‑138 (MQ=37)         ctgcGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCca                                                                                                                                                     <  2:330459/138‑1 (MQ=37)         ctgcGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAAcgcagcg                                                                                                                                           >  7:42173/1‑148 (MQ=37)             gcACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGc                                                                                                                                      >  3:291778/1‑149 (MQ=37)                ccGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAg                                                                                                                                   <  6:294970/149‑1 (MQ=37)                ccGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAg                                                                                                                                   <  3:3034/149‑1 (MQ=37)                   ccgcccccAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTa                                                                                                                                <  7:280735/146‑1 (MQ=21)                    cACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTAt                                                                                                                               <  2:145472/149‑1 (MQ=35)                     aCCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTAt                                                                                                                               >  5:15750/1‑148 (MQ=34)                         ccAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAgg                                                                                                                          <  5:105862/149‑1 (MQ=34)                         ccAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAgg                                                                                                                          >  7:69680/1‑149 (MQ=34)                            aCAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTAc                                                                                                                       <  4:291778/149‑1 (MQ=34)                             cAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCCGTGCATGAAGGCGGCTGTCCATAATACCATGAGTGAAGCTGCACGTAGCGGGCAGCCCAACAACCCACAACGCAGCGCAGGCCAGGTAACAAGGTa                                                                                                                        >  1:125381/1‑148 (MQ=11)                               gCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCt                                                                                                                     >  8:190244/1‑148 (MQ=34)                               gCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCt                                                                                                                     <  7:190244/148‑1 (MQ=34)                                      ccGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAgg                                                                                                             <  1:417540/149‑1 (MQ=34)                                           cgcTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTgg                                                                                                        <  4:351863/149‑1 (MQ=33)                                            gcTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTggg                                                                                                       <  2:400309/149‑1 (MQ=32)                                            gcTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTggg                                                                                                       <  5:47538/149‑1 (MQ=32)                                                  ccAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAg                                                                                                 >  5:333851/1‑149 (MQ=32)                                                  ccAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAg                                                                                                 >  7:113891/1‑149 (MQ=32)                                                   gcgcgctttgaaggccatcagcatcccctccagcaggcacactagcccggaaacacgcactttgtagaagtcactgttccgggcctgcatcaacccACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAg                                                                                                 >  2:310317‑M2/97‑149 (MQ=255)                                                   cAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGaa                                                                                                  <  3:315775/147‑1 (MQ=32)                                                   cAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGaa                                                                                                  >  4:315775/1‑147 (MQ=32)                                                        tttGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGa                                                                                           <  8:221889/149‑1 (MQ=32)                                                          tGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGAt                                                                                          <  5:11618/148‑1 (MQ=32)                                                            cGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGc                                                                                        <  4:240015/148‑1 (MQ=32)                                                            cGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGc                                                                                        <  7:55426/148‑1 (MQ=32)                                                             aaggccatcagcatcccctccagcaggcacactagcccggaaacacgcactttgtagaagtcactgttccgggcctgcatcaacccACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGc                                                                                        <  6:60350‑M2/62‑1 (MQ=255)                                                             aaggccatcagcatcccctccagcaggcacactagcccggaaacacgcactttgtagaagtcactgttccgggcctgcatcaacccACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCa                                                                                       <  2:141405‑M2/63‑1 (MQ=255)                                                                  catcagcatcccctccagcaggcacactagcccggaaacacgcactttgtagaagtcactgttccgggcctgcatcaacccACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGccc                                                                                  <  6:145365‑M2/68‑1 (MQ=255)                                                                    tcagcatcccctccagcaggcacactagcccggaaacacgcactttgtagaagtcactgttccgggcctgcatcaacccACAACGCAGCGCAGGCCAGGTATCCAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCgg                                                                                <  1:310317‑M2/70‑1 (MQ=255)                                                                                                  tCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGTCTTCTACAAAGTGCGTGTTTCt                                                  >  4:34858/1‑149 (MQ=11)                                                                                                   cGATATGCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCt                                                  <  6:239913/148‑1 (MQ=11)                                                                                                    gATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTgg                                                <  4:136580/149‑1 (MQ=32)                                                                                                     atatTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTggg                                               >  5:359526/1‑149 (MQ=32)                                                                                                      tatTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGc                                              <  5:423790/149‑1 (MQ=32)                                                                                                         tCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTgg                                           >  4:188856/1‑149 (MQ=33)                                                                                                           gCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGTCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGgt                                          <  1:181683/148‑1 (MQ=21)                                                                                                             cTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGgtggg                                       >  7:328546/1‑147 (MQ=21)                                                                                                                agggAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGcc                                     <  6:307820/145‑1 (MQ=21)                                                                                                                 gTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCct                                    <  1:123471/148‑1 (MQ=34)                                                                                                                   gAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCctgct                                 >  3:109131/1‑149 (MQ=34)                                                                                                                       cTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAg                             <  6:359526/149‑1 (MQ=34)                                                                                                                        tGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAgg                            >  5:244831/1‑149 (MQ=34)                                                                                                                           aCGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGTCTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGa                         <  3:34858/149‑1 (MQ=21)                                                                                                                                 cGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGa                   >  5:281966/1‑149 (MQ=34)                                                                                                                                       gCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAAGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGTCTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCt             >  6:201634/1‑149 (MQ=21)                                                                                                                                          catcaacccACAACGCAGCGCAGGCGAGGTATCAAGGTACCTCGTCCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCa          <  2:125381‑M2/140‑1 (MQ=255)                                                                                                                                           atcaacccACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCa          >  5:352796‑M2/9‑148 (MQ=255)                                                                                                                                                 ccACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAgagcg   >  8:259873‑M2/3‑149 (MQ=255)                                                                                                                                                  cACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAgcgcgc  >  8:128331‑M2/2‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAA‑ACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCTGAAGGGTTGATGCAGGCCCGGAACAGTGACTTCTACAAAGTGCGTGTTTCTGGGCTGGTGTGCCTGCTGGAGGGGATGCTGATGGCCTTCAAAGCGCGC  >  NC_002947/3838102‑3838394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.