New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3390166	51 (0.710)	4 (0.060)	4/254	NT	8.0%	coding (326/804 nt)	PP_2992	hypothetical protein
	?	NC_002947	= 3390187	44 (0.650)					coding (305/804 nt)	PP_2992	hypothetical protein

GCAGGTCGGGATTATTGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCGGTGAAATGCGTCAGCTCAGTTAGCCACAACCCCGT  >  NC_002947/3390041‑3390329                                                                                                                                                   |                                                                                                                                               gCAGGTCGGGATTATTGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGcg                                                                                                                                              <  4:353360‑M2/149‑3 (MQ=255) gCAGGTCGGGATTATTGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGcg                                                                                                                                              >  7:341641‑M2/1‑147 (MQ=255)    ggTCGGGATTATTGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGcggcc                                                                                                                                           >  5:77004‑M2/1‑144 (MQ=255)      tCGGGATTATTGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGcggcctt                                                                                                                                         >  3:35771‑M2/1‑142 (MQ=255)        gggATTATTGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGt                                                                                                                                       >  5:128712/1‑149 (MQ=255)         tgATTATTGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGATGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTc                                                                                                                                      <  3:19414/148‑1 (MQ=255)          gATTATTGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTcc                                                                                                                                     <  4:171497/149‑1 (MQ=255)           attattGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCa                                                                                                                                    <  7:27002/149‑1 (MQ=255)              attGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATg                                                                                                                                  >  6:186566/1‑148 (MQ=255)               ttGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGACAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTa                                                                                                                                >  1:105148/1‑149 (MQ=255)                  gggAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAg                                                                                                                             >  1:267609/1‑149 (MQ=255)                  gggAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAg                                                                                                                             <  7:396972/149‑1 (MQ=255)                      aGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCaa                                                                                                                         <  6:110995/149‑1 (MQ=255)                       gTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAAc                                                                                                                        >  3:57978/1‑149 (MQ=255)                        tCCCACATCACGCCATGGCCCCCGGTGTAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAAcc                                                                                                                       >  1:20784/1‑149 (MQ=255)                          ccACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAAcc                                                                                                                       >  2:39154/1‑147 (MQ=255)                            acaTCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCgaga                                                                                                                   >  6:378995/1‑149 (MQ=255)                            acaTCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCgaga                                                                                                                   <  2:51061/149‑1 (MQ=255)                            acaTCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCgaga                                                                                                                   <  8:214802/149‑1 (MQ=255)                                 aCGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTgcg                                                                                                              <  2:267609/149‑1 (MQ=255)                                           ccccGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGt                                                                                                    <  5:378995/149‑1 (MQ=255)                                                gttctgTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGgcac                                                                                               <  7:211380/144‑1 (MQ=255)                                                 tGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGgcacc                                                                                              <  6:128712/149‑1 (MQ=255)                                                      tAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGgcac                                                                                               >  8:211380/1‑143 (MQ=255)                                                              gCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTgg                                                                                 <  3:353360/149‑1 (MQ=255)                                                              cgtgcagtGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTg                                                                                  <  3:171125/141‑1 (MQ=255)                                                                cGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGGTCGTCCAGTGGCACCGCACCGCCTTTGGGa                                                                               <  1:39154/149‑1 (MQ=255)                                                                     tGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTgg                                                                           >  6:118550/1‑148 (MQ=255)                                                                       ggACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGc                                                                          <  4:57978/147‑1 (MQ=255)                                                                       ggACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCa                                                                         >  3:303674/1‑148 (MQ=255)                                                                       ggACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACAGCACCGCCTTTGGGACTGGCa                                                                         >  6:289028/1‑148 (MQ=255)                                                                        gACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCaa                                                                        >  3:45645/1‑148 (MQ=255)                                                                           ggATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAAc                                                                    >  2:205675/1‑149 (MQ=255)                                                                             aTCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGCGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACtg                                                                  >  3:129087/1‑149 (MQ=255)                                                                             aTCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGAGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACtg                                                                  >  3:231837/1‑149 (MQ=255)                                                                                       gCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTagc                                                         >  8:227180/1‑148 (MQ=255)                                                                                       gCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTagc                                                         >  3:3269/1‑148 (MQ=255)                                                                                         gATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCGTTGGGACTGGCAAAAACTGTGCTGTagccac                                                      >  6:135428/1‑148 (MQ=255)                                                                                             ggCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAgccgc                                                  >  2:304518/1‑149 (MQ=255)                                                                                               cAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCt                                                >  7:115282/1‑149 (MQ=255)                                                                                                   gtgtTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTccac                                            <  4:3269/149‑1 (MQ=255)                                                                                                          gCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCg                                     >  5:32300/1‑149 (MQ=255)                                                                                                           gaaGCGGGGGCGTAAGGGCGGGGCCTTCTAATGCTTACGCGCGGCCTTGTCCATTTACAGCCAACCGAGACTGCGCTCGTCCAGGGGCACCGCACCGTCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCTACCACATCg                                     <  8:65331/147‑1 (MQ=255)                                                                                                            aaGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCGGt                                   <  2:105148/149‑1 (MQ=255)                                                                                                                 ggCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCGGTGAAAt                              <  8:115282/149‑1 (MQ=255)                                                                                                                    gcgAAAGGCCGGGGACTGCAAATGCTCACGCGcggcctttcgcgcccgcttgcagaacacgctgccgatcgcagatatcgatccgtcccagttcggcgtcctctacttcaccgggggccatggcgggatgggggacttcccccataatc                           <  7:295998‑M2/149‑118 (MQ=255)                                                                                                                     cgAAAGGCCGGGGACTGCAAATGCTCACGCGcggcctttcgcgcccgcttgcagaacacgctgccgatcgcagatatcgatccgtcccagttcggcgtcatctacttcaccgggggccatggcgtgatgtgg                                           >  7:199723‑M2/1‑31 (MQ=255)                                                                                                                     cgAAAGGCCGGGGACTGCAAATGCTCACGCGcggcctttcgcgcccgcttgcagaacacgctgccgatcgcagatatcgatccgtcccagttcggcgtcatctacttcaccgggggccatggcgtgatgtgg                                           <  8:199723‑M2/132‑102 (MQ=255)                                                                                                                     cgAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCGGTGAAATGCGt                          <  1:205675/149‑1 (MQ=255)                                                                                                                      gAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCGATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCGGTGAAATGCGt                          >  7:119609/1‑148 (MQ=255)                                                                                                                       aaaGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGATGTAGCCAGCCGCCTCCACCACATCGGTGAAATGCGt                          >  7:218115/1‑147 (MQ=255)                                                                                                                                 gACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTCGCAAAATCTGTGCTGTAGCCAGACGCCTCCACCACATCGGTGAAATGCGTCAGCTCAGATAg              >  5:85694/1‑149 (MQ=255)                                                                                                                                  aCTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACTGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCGGTGAAATGCGTCAGCTCAGTTAGc             <  4:176322/149‑1 (MQ=255)                                                                                                                                   cTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCGGTGAAATGCGTCAGCTCAGTTAGcc            <  1:304518/149‑1 (MQ=255)                                                                                                                                     gCAAATGCTCACGCGcggcctgtcgcgcccgcgggcagaacacgctgccgatcgcagatatcgatccgtcccagttcggcgtcatctacgtcaccgggggccatggcgtgaggtgggacttccccactaatcccgacctgcgacgtgtc          >  8:295998‑M2/1‑15 (MQ=255)                                                                                                                                            cTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCGGTGAAATGCGTCAGCTCAGTTAGCCACAAcccc    <  4:303674/148‑1 (MQ=255)                                                                                                                                               aCGCGCGGCCTTGTACATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTTGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCGGTGAAATGCGTCAGCTCAGTTAGCCACAACCCCGt  <  4:231837/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               GCAGGTCGGGATTATTGGGGAAGTCCCACATCACGCCATGGCCCCCGGTGAAGTAGATGACGCCGAACTGGGACGGATCGATATCTGCGATCGGCAGCGTGTTCTGCAAGCGGGCGCGAAAGGCCGGGGACTGCAAATGCTCACGCGCGGCCTTGTCCATGTACAGCCAACCGAGACTGCGCTCGTCCAGTGGCACCGCACCGCCTTTGGGACTGGCAAAAACTGTGCTGTAGCCAGCCGCCTCCACCACATCGGTGAAATGCGTCAGCTCAGTTAGCCACAACCCCGT  >  NC_002947/3390041‑3390329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.