New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808174 =	2 (0.030)	17 (0.400)	12/212	2.3	54.4%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	27 (0.630)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

TTTGTTCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4808346‑4808174 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagatcgagcgccgcccgcgcggcgcttcgcgggTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCG‑ACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACAAA  <  NC_002947/5988935‑5988795                                                                                                                                                                                                                                                                                                                             TTTGTTCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCTGCGTTCGAATTTTGAGTGGACGGCGTAGGAAATTTGAGGTGATTGCCTCAGGAGTTTCAGCGCCTCTGAGAT                                                                                                                                                                             >  6:321155/1‑144       CTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGC                                                                                                                                                                   >  7:171791/1‑148                ccGGGTCTTTGTTCTTGGATTTTCGTGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCG                                                                                                                                                            <  6:133167/144‑1                        TTGTTGTTGGATTTTCGAGCGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGACTTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCG                                                                                                                                                  <  8:272168/148‑1                                GGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACC                                                                                                                                          >  4:242638/1‑148                                  ATTTTCGAGGGGAGGCGGAGTTGGAATTTTGAGGGTGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGTGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCG                                                                                                                                        <  7:89572/148‑1                                    TTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCT                                                                                                                                      >  1:15927/1‑148                                                      TTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGTCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCggc                                                                                                                     >  7:96548/1‑144                                                          AATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAgt                                                                                                                >  5:25842/1‑145                                                               TGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTC                                                                                                           <  3:242638/147‑1                                                               TGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCT                                                                                                            <  6:25842/146‑1                                                                gcGGGGGCGGCGGTGGAATTTGGAGGCGACGCCGGTGGAATTTGGAGGGGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCCAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCT                                                                                                         <  2:308248/146‑1                                                                                AATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGC                                                                                          >  7:233809/1‑147                                                                                             CGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCG‑ACCGCCTTGTTTG                                                                           <  8:171791/148‑1                                                                                                         TTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCG‑ACCGCCTTGTTTGT                                                                          >  8:219413/1‑137                                                                                                         TTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCG‑ACCGCCTTGTTTGT                                                                          <  7:219413/137‑1                                                                                                           gGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCg                                                                                                                       <  7:71558/91‑2                                                                                                           gGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCg                                                                                                                       >  8:71558/2‑91                                                                                                                TGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCG‑ACCGCCTTGTTTGTACGACGCGATATCGAGac                                                        <  8:233809/148‑3                                                                                                                             ATTTTCAGAGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACTTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCG‑ACCGCCTTGTTTGTACGACGCGATATCGAGACATGCCCCAAGGc                                            <  6:264173/147‑2                                                                                                                                TTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCG‑ACCGCCTTGTTTGTACGACGCGATATCGAGACATGCCCCAAGGcggt                                         <  2:15927/147‑5                                                                                                                                              GATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCG‑ACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTC                             <  5:7107/146‑1                                                                                                                                                TCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCG‑ACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCAC                         <  1:50628/148‑1                                                                                                                                                TCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTGTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCG‑ACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCA                          <  5:138533/147‑1                                                                                                                                                  GAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGAACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCAC                         <  1:262938/147‑1                                                                                                                                                   AGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCT                                                                                                            >  6:80596/1‑62                                                                                                                                                   AGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCT                                                                                                            <  5:80596/62‑1                                                                                                                                                                       TCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCG‑ACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACAAA  <  7:269750/148‑1                                                                                                                                                                       TCGCGGGTAAACCCGCTACTACGTTTGTTTCTGGCCAATACCTCCTGTGCCAGGCGCGCGCG‑ACCGCCTTGTTTGTAAGAAGCGATATAGAGGCCTGCCGCCGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACA    >  6:263051/1‑146                                                                                                                                                                                                                                                                                                                             TTTGTTCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4808346‑4808174 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagatcgagcgccgcccgcgcggcgcttcgcgggTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCG‑ACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACAAA  <  NC_002947/5988935‑5988795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.