| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 4,980,585 | +GGC | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4980585 | 1 (0.020) | 39 (0.700) +GGC |
35/276 | 0.7 | 97.5% | intergenic (‑24/+44) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947 | 4980586 = | 1 (0.020) | intergenic (‑25/+43) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE | |||||
TAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4980452‑4980585‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCG > NC_002947/4980586‑4980731 ||| TAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGG > 6:58525/1‑147TAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCCCTATGCGGC > 4:103382/1‑148 ACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAA < 8:98096/147‑1 AGGCTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACAC > 1:438/1‑148 AGGCTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACAC > 4:144736/1‑148 AGGCTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACA > 6:265137/1‑147 GCTTTGCCATTGATAGAACGGGGCGGGGGCACGCGGGGGAAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACCGCCCCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGATTTGCGGCCCCAATTACAAACAC > 1:206526/1‑147 CTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAA < 3:168442/148‑1 CTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCA > 3:176313/1‑147 CTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACC > 5:98913/1‑146 TTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAA > 6:119494/1‑146 AGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAAT > 8:29212/1‑147 AACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCA > 4:91085/1‑147 GGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATC < 3:142383/148‑1 GGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGCACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATC > 6:131733/1‑146 GCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGA < 8:139934/148‑1 GGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGAT < 6:152653/147‑1 CAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTC < 5:119494/147‑1 CAGCAAGGGGAACAAGCCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCATGTAATCTGAATGATTGTCTGCATGATGGTGCTTT > 8:135975/1‑147 GCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATG > 4:281686/1‑123 GCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATG < 3:281686/123‑1 GGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCATGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAA < 3:91085/148‑1 AAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCCATTACAAACACCAAAGCCAATTCAATCATCAGGTCATCTGAATGATGGTCTGCCTGGTGGTGGTTTCAGTGGGAATGGTC > 8:55563/1‑148 AGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAAAACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTATGCATGAAGGTGCTTTCAGTGGAAATGGTCTTTGC > 5:17160/1‑147 GTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGAAGGTCTGCATGATGGTGCTTTGAGTGGAAATGGTCTTGGGAT > 2:123042/1‑148 AACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATT > 1:63091/1‑148 GACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCC > 3:219638/1‑148 AGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTAGCGGGCCCAATTACAAACACCAAAGCCAATACAATAATCAGGTCATGAGTATGATGGTCTGCATGATGGTGCGTTCAGTGGAAATGGTCTTGGCATTGGCCTGG > 8:185003/1‑148 GCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGG < 5:265137/147‑1 GCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTC > 6:157762/1‑132 GCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTC < 5:157762/132‑1 CGCTTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAG > 7:27498/1‑148 TTCATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTT > 5:11881/1‑147 CATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCT > 7:251583/1‑148 ATTCGCGTGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTG < 5:58525/145‑1 TGAACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCC > 5:60282/1‑147 ACCTTCACATTCTT‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTT < 6:99125/146‑1 ACATTCTT‑TGGGCCGCTTTGCTGACCCAATTACATACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGG < 1:182859/147‑1 T‑GGGGCCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAG > 7:13998/1‑148 CCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCG > 5:107979/1‑147 ||| TAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCA‑GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4980452‑4980585‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTCG > NC_002947/4980586‑4980731 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |