| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5264837 = | 67 (1.170) | 3 (0.060) | 3/268 | 5.7 | 4.9% | coding (1775/2067 nt) | yjiY | putative transporter |
| ? | NC_002947 | 5264917 = | 53 (0.970) | coding (1695/2067 nt) | yjiY | putative transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGTGGCCGCTGTTTGGTATCTCCAACCAGATGCTGGCCGGTATCGCCTTGATGCTCGGTACTGTGGTGCTGATCAAGATGAAGCGTCAGCGCTACATCTGGGTCACCCTGCTGCCGGCCGTATGGCTGCTGATCTGCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5264978‑5264837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccacAGTACCGAGCATCAAGGCGATACCGGCCAGCATCTGGTTGGAGATACCAAACAGCGGCCACAGGGTGTTGATGCCACCCAGCGGGTCGATGACGCCCTGGTACAGCAGATAGCCCCAGAGCGCCACGCAGCCAGCAGTGGCAAG > NC_002947/5264917‑5265060 TGTGGCCGCTGTTTGGTATCTCCAACCAGATGCTGGCCGGTATCGCATTGATGCTCGGTACTGTGGTGCTGATCAATATGAAGCGTCAGCGCTACATCTGGGTCAACCTGCTGACGGCCGTATGGATTCTGATCTGCACAACtgct > 5:259359/1‑142 GTGGTGCTGATCAAGATGAAGCGTCAGCGCTACATCTGGGTCACCCTGCTGCCGGCCGTATGGCTGCTGATCTGCACCACAGTACCGAGCATCAAGGCGATACCGGCCAGCATCTG > 7:3181/1‑116 GTGGTGCTGATCAAGATGAAGCGTCAGCGCTACATCTGGGTCACCCTGCTGCCGGCCGTATGGCTGCTGATCTGCACCACAGTACCGAGCATCAAGGCGATACCGGCCAGCATCTG < 8:3181/116‑1 CCCTGCTGCCGGCCGTATGGCTGCTGATCTGCACCACAGTACCGAGCATCAAGGCGATACCGGCCAGCATCTGGTTGGAGATACCAAACAGCGGCCACAGGGTGTTGATGCCACCCAGCGGGTCGATGACGCCCTGGTACAGCAGATA < 1:15396/148‑1 ACAGTACCGAGCATCAAGGCGATACCGGCCAGCATCTGGTTGGAGATACCAAACAGCGGCCACAGGGTGTTGATGCCACCCAGCGGGTCGATGACGCCCTGGTACAGCAGATAGCCCCAGAGCGCCACGCAGCCAGCAGTGGCAAG > 7:68297/1‑146 TGTGGCCGCTGTTTGGTATCTCCAACCAGATGCTGGCCGGTATCGCCTTGATGCTCGGTACTGTGGTGCTGATCAAGATGAAGCGTCAGCGCTACATCTGGGTCACCCTGCTGCCGGCCGTATGGCTGCTGATCTGCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5264978‑5264837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccacAGTACCGAGCATCAAGGCGATACCGGCCAGCATCTGGTTGGAGATACCAAACAGCGGCCACAGGGTGTTGATGCCACCCAGCGGGTCGATGACGCCCTGGTACAGCAGATAGCCCCAGAGCGCCACGCAGCCAGCAGTGGCAAG > NC_002947/5264917‑5265060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |