New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5605866	58 (1.010)	4 (0.070)	4/266	5.3	7.7%	coding (81/1419 nt)	PP_4926	HlyD family secretion protein
	?	NC_002947	= 5605950	41 (0.760)					coding (2189/2196 nt)	cyaB	cyclolysin secretion/processing ATP‑binding protein CyaB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAGGTAGCGCGGCAAGGGATGCACTGGCGTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5605714‑5605866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggggccgCCGTATGAGTGTGGCGTTCAAGGACCTTGCCGAGCGCTACCGGGATGCGTGGAGGACGGCATGGCGAAAGCGCCGGAGCATGGACGGCCCCGTACGTGACCCCGACGAACTGGCCTTTTTACCTGCGGCACTGTCCTTGCAGGAA  <  NC_002947/5605950‑5605806                                                                                                                                                                                                                                                                                                            TCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAGGTAGCGCGGCAAGGGATGCACTGGCGTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACG                                                                                                                                                         >  5:113522/1‑147                      CAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAGGTAGCGCGGCAAGGGATGCACTGGCGTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGG                                                                                                                                                        >  1:35079/1‑127                      CAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAGGTAGCGCGGCAAGGGATGCACTGGCGTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGG                                                                                                                                                        <  2:35079/127‑1                                                         CCACTGCAGGTAGCGCGGCAAGGGATGCACTGGCGTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGCCGTATGAGTGTGGCGTTCAAGGACCTTGCCGAGCGCTACCGGGATGCGTG                                                                                                >  7:299533/1‑148                                                                                    CACTGGCGTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGCCGTATGAGTGTGGCGTTCAAGGACCTTGCCGAGCGCTACCGGGATGCGTGGAGGACGGCATGGCGAAAGCGCCGGAG                                                                     >  2:27741/1‑148                                                                                         GCGTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGCCGTATGAGTGTGGCGTTCAAGGACCTTGCCGAGCGCTACCGGGATGCGTGGAGGACGGCATGGCGAAAGCGCCGGAGCATGG                                                                <  8:299533/148‑1                                                                                                   CAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGCCGTATGAGTGTGGCGTTCAAGGACCTTGCCGAGCGCTACCGGGATGCGTGGAGGACGGCATCGCGAAAGCGCCGGAGCATGGACGGCCCCG                                                       <  1:27741/147‑1                                                                                                                                                  CGGGGCCGCCGTATGAGTGTGGCGTTCAAGGACCTTGCCGAGCGCTACCGGGATGCGTGGAGGACGGCATGGCGAAAGCGCCGGAGCATGGACGGCCCCCTACGTGACCCCGACGAACTGGCCTTTTTACCTGCGGCACTGTCCTTG        >  2:278717/1‑147                                                                                                                                                  CGGGGCAGCCGTATGAGTGTGGCGTTAAAGGACCTTGCCGAGCGCTACCGGGATGCGTGGAGGACGGAATGGCGAAAGCGCCGGAGCATGTACGGCCCCGTACGTGACCCCGACGAAATGGCCTATTTACCTGCGGCACTGacatt         >  6:238022/1‑141                                                                                                                                                       caGCCGTATGAGTGTGGCGTTCAAGTACGTTGCCGAGCGCTACCGGTATGCGTGGAGGACGGCATTGAGAAAGCGCGGTAGCATGGACGGCCCTTTACGTGACCCCGACGAACTGGCCTTTTTACCTGCGGCACTGTCCTTGCAGGAA  <  1:90242/146‑1                                                                                                                                                                                                                                                                                                            TCGATCTCACCGATGCAAGCCCAGGCAAGCGCCAGCCCGATGAACATCAGCAGGCTCCACTGCAGGTAGCGCGGCAAGGGATGCACTGGCGTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5605714‑5605866 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggggccgCCGTATGAGTGTGGCGTTCAAGGACCTTGCCGAGCGCTACCGGGATGCGTGGAGGACGGCATGGCGAAAGCGCCGGAGCATGGACGGCCCCGTACGTGACCCCGACGAACTGGCCTTTTTACCTGCGGCACTGTCCTTGCAGGAA  <  NC_002947/5605950‑5605806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.