New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5605866	58 (1.010)	4 (0.070)	4/266	5.3	7.7%	coding (81/1419 nt)	PP_4926	HlyD family secretion protein
	?	NC_002947	= 5605950	41 (0.760)					coding (2189/2196 nt)	cyaB	cyclolysin secretion/processing ATP‑binding protein CyaB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAA  >  NC_002947/5605804‑5606097                                                                                                                                                   |                                                                                                                                                    gTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATAcgg                                                                                                                                                     <  5:90537/147‑1 (MQ=255)   ttCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTAAAGGGCCGTCCATGCTACCGCGCTTTCTCAATGCCGTCCTCCACGCATACCGGTAGCGCTCGGCAACGTACTTGAACGCCACACTCATAcggctg                                                                                                                                                  >  1:90242/1‑146 (MQ=255)         cAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTAGGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCg                                                                                                                                             <  2:278717/147‑1 (MQ=255)         cAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGa                                                                                                                                            <  7:258920/148‑1 (MQ=255)          aatgtcAGTGCCGCAGGTAAATAGGCCATTTCGTCGGGGTCACGTACGGGGCCGTACATGCTCCGGCGCTTTCGCCATTCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTTAACGCCACACTCATACGGCTGCCCCg                                                                                                                                             <  6:238022/141‑1 (MQ=255)          aaGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGAGGCCCCGa                                                                                                                                            >  5:139092/1‑147 (MQ=255)                     cGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGAt                                                                                                                                >  4:106392/1‑148 (MQ=255)                     cGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGCCAAGGTCGTTGAACGCCTCACTCATGCGGCTGCCCCGAGCTGCAGTTGAt                                                                                                                                >  2:101043/1‑148 (MQ=255)                       cAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGc                                                                                                                              <  2:113435/148‑1 (MQ=255)                                  gCCAGTTCGTCGGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATa                                                                                                                   <  8:64100/148‑1 (MQ=255)                                     aGTTCGTCGGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGt                                                                                                                >  3:9850/1‑148 (MQ=255)                                           tcgGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTCATGCAGGTAGGCATAGGTGCCCtg                                                                                                          <  7:75488/148‑1 (MQ=255)                                            cgGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCtg                                                                                                          <  6:271082/147‑1 (MQ=255)                                                      tACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACTCTCATACTGCGGCCCCTAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCca                                                                                               <  4:117855/148‑1 (MQ=255)                                                            gCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCt                                                                                         >  3:302312/1‑148 (MQ=255)                                                              cGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCtca                                                                                       >  4:153682/1‑148 (MQ=255)                                                                    tGCTCCGGCGCTTTCGCCATGCCGTCCTCCGCGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGa                                                                                 <  1:55229/148‑1 (MQ=255)                                                                      cTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGt                                                                               >  2:149229/1‑148 (MQ=255)                                                                      cTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGt                                                                               <  7:14143/148‑1 (MQ=255)                                                                        ccGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTcc                                                                             >  3:162118/1‑148 (MQ=255)                                                                         cGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTcc                                                                             <  4:302312/147‑1 (MQ=255)                                                                         cGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTc                                                                              <  1:160635/146‑1 (MQ=255)                                                                            cgcTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTg                                                                         <  1:149229/148‑1 (MQ=255)                                                                              cTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCt                                                                       <  3:153682/148‑1 (MQ=255)                                                                               tttCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCt                                                                       <  6:139092/147‑1 (MQ=255)                                                                                ttCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCt                                                                       >  5:240817/1‑146 (MQ=255)                                                                                  cGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAgg                                                                                                                 <  4:122726/102‑1 (MQ=255)                                                                                  cGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAgg                                                                                                                 >  3:122726/1‑102 (MQ=255)                                                                                  cGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCg                                                                     <  6:285345/146‑1 (MQ=255)                                                                                    ccATGCCGTCCTCCACGCATCCCGGTAGCGCTCTGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCgatga                                                                 <  2:90242/148‑1 (MQ=255)                                                                                     cATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATACCCCAGCAGCTCATCATGAGTCCCTTGCTCgatga                                                                 >  5:62819/1‑147 (MQ=255)                                                                                          cGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGcc                                                           >  4:106561/1‑148 (MQ=255)                                                                                              ctccACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCACg                                                       >  4:298838/1‑148 (MQ=255)                                                                                                  aCGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCACGCTc                                                    >  2:129620/1‑147 (MQ=255)                                                                                                                     ggCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCg                                 >  5:113564/1‑147 (MQ=255)                                                                                                                        aaGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCAt                             <  3:106561/148‑1 (MQ=255)                                                                                                                                tGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCCCGCTCCATGACCACGATGCGGTCGGCATGGCGTAc                      >  5:221781/1‑147 (MQ=255)                                                                                                                                    cGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGcc                  >  4:256093/1‑147 (MQ=255)                                                                                                                                        acacTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAg             <  3:106392/148‑1 (MQ=255)                                                                                                                                        aaaatCATACGGCGGCCCCGAGCTGAAGTTTATGCAGGTAGGCATAGGTGCCCTGTGGATAAACCAGCAGCTCATAATGAGTACCTTGCTCCATGATCTCCAAACGCTCCATCACCAACATGCGGTCGGCATGCCGTACTGCAGAAAg             >  2:273560/5‑148 (MQ=255)                                                                                                                                         cacTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGc            >  3:47818/1‑148 (MQ=255)                                                                                                                                             cATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGa         >  6:118368/1‑147 (MQ=255)                                                                                                                                                 cggcggCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCTCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATgg      <  2:167003/146‑1 (MQ=255)                                                                                                                                                 cggcggCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCTCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATgg      >  1:167003/1‑146 (MQ=255)                                                                                                                                                   gcggcCCCGAGCTGCAGTTGATGAAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATCATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCaa  >  7:199173/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GTTTCCTGCAAGGACAGTGCCGCAGGTAAAAAGGCCAGTTCGTCGGGGTCACGTACGGGGCCGTCCATGCTCCGGCGCTTTCGCCATGCCGTCCTCCACGCATCCCGGTAGCGCTCGGCAAGGTCCTTGAACGCCACACTCATACGGCGGCCCCGAGCTGCAGTTGATGCAGGTAGGCATAGGTGCCCTGTGGATAACCCAGCAGCTCATCATGAGTCCCTTGCTCGATGATCTGCCCACGCTCCATGACCACGATGCGGTCGGCATGGCGTACTGCCGAAAGCCGATGGGCAA  >  NC_002947/5605804‑5606097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.