| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 1,842,640 | Δ36 bp | coding (2119‑2154/2754 nt) | gacS ← | sensor protein GacS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1842639 | 1 (0.020) | 60 (1.090) | 50/270 | 0.2 | 98.4% | coding (2155/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 1842676 = | 1 (0.020) | coding (2118/2754 nt) | gacS | sensor protein GacS | |||||
CATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTA > NC_002947/1842493‑1842785 | cATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACg > 8:88427‑M1/1‑147 (MQ=255) aTGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACgg > 4:147313‑M1/1‑146 (MQ=255) gCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcct > 5:228157‑M1/1‑141 (MQ=255) gtgCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTAGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCAGCCGTCCATGCCGGGCATCTGCACggcctgtacc > 3:24322‑M1/1‑138 (MQ=255) gtgCAACAACGCGCGGTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtac < 1:119221‑M1/147‑10 (MQ=255) caacaaCGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgc < 4:115346‑M1/147‑13 (MQ=255) aacaacGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccg > 8:297680‑M1/1‑134 (MQ=255) aacGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgc > 8:197993‑M1/1‑131 (MQ=255) aacGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgc < 7:197993‑M1/146‑16 (MQ=255) ttCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgtt > 4:309790‑M1/1‑120 (MQ=255) tCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttga > 4:315058‑M1/1‑119 (MQ=255) gTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacg > 4:115607‑M1/1‑117 (MQ=255) gTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgac < 4:164163‑M1/147‑31 (MQ=255) ttGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacgg < 7:297680‑M1/148‑33 (MQ=255) ccATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggacag > 4:240030‑M1/1‑112 (MQ=255) gcatggGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacc < 3:115607‑M1/147‑41 (MQ=255) gTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcaccca < 2:109053‑M1/148‑51 (MQ=255) tGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccag > 8:2576‑M1/1‑97 (MQ=255) tGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcaccca < 6:261952‑M1/147‑51 (MQ=255) gAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccagg > 1:219388‑M1/1‑96 (MQ=255) aGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccagg < 3:98774‑M1/147‑53 (MQ=255) gCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCTCAGGCGTATCTGTTCGGTACAGGCGCGTCCGTCCATGCGGGGCATCTGCACgtcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtctt < 4:212482‑M1/148‑57 (MQ=255) cgacgaTCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtctt < 5:72088‑M1/147‑57 (MQ=255) gacgaTCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcg < 3:309790‑M1/148‑59 (MQ=255) cgaTCGGCAGCGGGTTGCCGCTCTGGGTGGTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgag < 2:166950‑M1/148‑61 (MQ=255) cGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcag < 6:13223‑M1/147‑64 (MQ=255) cGGCAGCGGGTTGCCGCTCTGGGGGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcag < 5:106347‑M1/147‑64 (MQ=255) cAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtt > 1:172848‑M1/1‑81 (MQ=255) ttGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttac > 3:277897‑M1/1‑74 (MQ=255) ttGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggttttta > 5:9812‑M1/1‑74 (MQ=255) cGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATATGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcag > 4:59313‑M1/1‑70 (MQ=255) ctctGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagca < 3:315058‑M1/148‑81 (MQ=255) tctGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagca < 6:138760‑M1/147‑81 (MQ=255) ggTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttg < 7:144093‑M1/148‑86 (MQ=255) ggTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggt < 3:147313‑M1/146‑84 (MQ=255) ttCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtt < 1:92275‑M1/126‑68 (MQ=255) ttCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtt > 2:92275‑M1/1‑59 (MQ=255) ccACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcat < 7:2576‑M1/146‑93 (MQ=255) ccACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacc > 5:180295‑M1/1‑54 (MQ=255) ccACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacc < 6:180295‑M1/102‑49 (MQ=255) aGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcatatccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgt < 1:84472‑M1/148‑99 (MQ=255) aGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcatatccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgt < 1:88937‑M1/148‑99 (MQ=255) ggATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgcggcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcga < 5:151224‑M1/147‑102 (MQ=255) cTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgca < 2:172848‑M1/147‑106 (MQ=255) gTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTa > 6:164776/1‑147 (MQ=255) ttCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataacgattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcag < 2:34804‑M1/145‑107 (MQ=255) ttCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagag > 2:64968‑M1/1‑39 (MQ=255) ttCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcaga > 5:301325‑M1/1‑39 (MQ=255) ttCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgca < 2:288711‑M1/144‑106 (MQ=255) ttCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgc < 2:219388‑M1/143‑105 (MQ=255) tCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagt > 6:28484‑M1/1‑38 (MQ=255) tACAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataacaattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattt > 8:34264‑M1/1‑34 (MQ=255) cAGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcg < 1:64968‑M1/148‑117 (MQ=255) aGGCGCGGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcg < 6:9812‑M1/147‑117 (MQ=255) gcgGCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggctttgtcgtcgacgcagagtattttcggtcg > 6:32160‑M1/1‑27 (MQ=255) gCCGTCCATGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcgtcgagcagggtttttaccagcagcagggtgggggcattgtcgtcgaggccgagtatattcggtagtcg > 6:27892‑M1/1‑24 (MQ=255) aTGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgt > 3:9591‑M1/1‑17 (MQ=255) tGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgtt < 4:9591‑M1/148‑133 (MQ=255) tGCCGGGCATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgtt < 7:88427‑M1/148‑133 (MQ=255) gggCATCTGCACggcctgtaccggcgcataaccatagttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggctttgtcgtcgacgcagagtattttcggtcgtcgctggccgttgggg < 3:240030‑M1/148‑137 (MQ=255) cATCTGCACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttg > 7:135456‑M1/1‑9 (MQ=255) cACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgctccc > 2:10608‑M1/1‑3 (MQ=255) cACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgctccc > 2:20044‑M1/1‑3 (MQ=255) cACggcctgtaccgccgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgct < 3:210891‑M1/144‑142 (MQ=255) aCggcctgtaccgccgcataagcattgttgacggcctgtacctcggcacccaggtcttcgagcatggtttttacgagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgctcccct < 3:201282‑M1/148‑147 (MQ=255) aCggcctgtaccgccgcataaccattgttgacggccagtacctctgcacccaggtcttcgagcaggttttttaccagcagcaggttggcggcattgtcgtcgacgcagattattttcggtcgtcgctggccgttggggttgctccc < 6:282560‑M1/146‑145 (MQ=255) | CATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTA > NC_002947/1842493‑1842785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |