| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 1,842,640 | Δ36 bp | coding (2119‑2154/2754 nt) | gacS ← | sensor protein GacS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1842639 | 1 (0.020) | 60 (1.090) | 50/270 | 0.2 | 98.4% | coding (2155/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 1842676 = | 1 (0.020) | coding (2118/2754 nt) | gacS | sensor protein GacS | |||||
CATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCT > NC_002947/1842529‑1842821 | catgccgctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacg > 8:88427‑M2/148‑148 (MQ=255) atgccgctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacgg > 4:147313‑M2/147‑148 (MQ=255) gctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCt > 5:228157‑M2/142‑146 (MQ=255) gtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctaggtgttctcccacaggcggatctgttcggtacaggcgcagccgtccatgccgggcatctgcacGGCCTGTAcc > 3:24322‑M2/139‑148 (MQ=255) gtgcaacaacgcgcggttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTAc < 1:119221‑M2/9‑1 (MQ=255) caacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTAccgc < 4:115346‑M2/12‑1 (MQ=255) aacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTAccgccg > 8:297680‑M2/135‑148 (MQ=255) aacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACcgccgc > 8:197993‑M2/132‑146 (MQ=255) aacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACcgccgc < 7:197993‑M2/15‑1 (MQ=255) ttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCAttgtt > 4:309790‑M2/121‑147 (MQ=255) tcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGa > 4:315058‑M2/120‑148 (MQ=255) gttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGAc < 4:164163‑M2/30‑1 (MQ=255) gttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACg > 4:115607‑M2/118‑148 (MQ=255) ttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACgg < 7:297680‑M2/32‑1 (MQ=255) ccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGACAg > 4:240030‑M2/113‑148 (MQ=255) gcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTAcc < 3:115607‑M2/40‑1 (MQ=255) gtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCa < 2:109053‑M2/50‑1 (MQ=255) tgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCa < 6:261952‑M2/50‑1 (MQ=255) tgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAg > 8:2576‑M2/98‑148 (MQ=255) gagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAgg > 1:219388‑M2/97‑148 (MQ=255) agggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAgg < 3:98774‑M2/52‑1 (MQ=255) gcgacgatcggcagcgggttgccgctctgggtgttctccctcaggcgtatctgttcggtacaggcgcgtccgtccatgcggggcatctgcacGTCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCtt < 4:212482‑M2/56‑1 (MQ=255) cgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCtt < 5:72088‑M2/56‑1 (MQ=255) gacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCg < 3:309790‑M2/58‑1 (MQ=255) cgatcggcagcgggttgccgctctgggtggtctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAg < 2:166950‑M2/60‑1 (MQ=255) cggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAg < 6:13223‑M2/63‑1 (MQ=255) cggcagcgggttgccgctctgggggttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAg < 5:106347‑M2/63‑1 (MQ=255) cagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGtt > 1:172848‑M2/82‑148 (MQ=255) gTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTa > 6:164776/1‑147 (MQ=255) ttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTa > 5:9812‑M2/75‑145 (MQ=255) ttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTAc > 3:277897‑M2/75‑146 (MQ=255) cgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatatgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACcagcag > 4:59313‑M2/71‑148 (MQ=255) ctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACcagcagca < 3:315058‑M2/80‑1 (MQ=255) tctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACcagcagca < 6:138760‑M2/80‑1 (MQ=255) ggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGt < 3:147313‑M2/83‑1 (MQ=255) ggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTg < 7:144093‑M2/85‑1 (MQ=255) ttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGtt < 1:92275‑M2/67‑1 (MQ=255) ttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGtt > 2:92275‑M2/60‑126 (MQ=255) ccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCAcc > 5:180295‑M2/55‑102 (MQ=255) ccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCAcc < 6:180295‑M2/48‑1 (MQ=255) ccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCAt < 7:2576‑M2/92‑1 (MQ=255) aggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATATCCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTgtcgt < 1:84472‑M2/98‑1 (MQ=255) aggcggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATATCCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTgtcgt < 1:88937‑M2/98‑1 (MQ=255) ggatctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCGGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGa < 5:151224‑M2/101‑1 (MQ=255) ctgttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCa < 2:172848‑M2/105‑1 (MQ=255) ttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACGATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCag < 2:34804‑M2/106‑1 (MQ=255) ttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGc < 2:219388‑M2/104‑1 (MQ=255) ttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCagag > 2:64968‑M2/40‑147 (MQ=255) ttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCaga > 5:301325‑M2/40‑146 (MQ=255) ttcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCa < 2:288711‑M2/105‑1 (MQ=255) tcggtacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGt > 6:28484‑M2/39‑147 (MQ=255) tacaggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACAATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTAttt > 8:34264‑M2/35‑147 (MQ=255) caggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCg < 1:64968‑M2/116‑1 (MQ=255) aggcgcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCg < 6:9812‑M2/116‑1 (MQ=255) gcggccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCTTTGTCGTCGACGCAGAGTATTTTCGgtcg > 6:32160‑M2/28‑147 (MQ=255) gccgtccatgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCGTCGAGCAGGGTTTTTACCAGCAGCAGGGTGGGGGCATTGTCGTCGAGGCCGAGTATATTCGGtagtcg > 6:27892‑M2/25‑147 (MQ=255) atgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGt > 3:9591‑M2/18‑148 (MQ=255) tgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGtt < 4:9591‑M2/132‑1 (MQ=255) tgccgggcatctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGtt < 7:88427‑M2/132‑1 (MQ=255) gggcatctgcacGGCCTGTACCGGCGCATAACCATAGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCTTTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTgggg < 3:240030‑M2/136‑1 (MQ=255) catctgcacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTg > 7:135456‑M2/10‑148 (MQ=255) cacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCt < 3:210891‑M2/141‑1 (MQ=255) cacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTccc > 2:10608‑M2/4‑147 (MQ=255) cacGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTccc > 2:20044‑M2/4‑147 (MQ=255) acGGCCTGTACCGCCGCATAAGCATTGTTGACGGCCTGTACCTCGGCACCCAGGTCTTCGAGCATGGTTTTTACGAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCt < 3:201282‑M2/146‑1 (MQ=255) acGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCTGCACCCAGGTCTTCGAGCAGGTTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGATTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTccc < 6:282560‑M2/144‑1 (MQ=255) | CATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCT > NC_002947/1842529‑1842821 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |