New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4601529 =55 (0.960)3 (0.060) 3/266 5.7 5.4% coding (363/633 nt) PP_4073 hypothetical protein
?NC_002947 4601591 = 54 (1.000)coding (301/633 nt) PP_4073 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTC  >  NC_002947/4601384‑4601675
                                                                                                                                                   |                                                                                                                                                   
tGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAg                                                                                                                                                   >  2:10886/1‑148 (MQ=255)
   tCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGGTGGGCGGTGACCAGTTg                                                                                                                                                >  8:150132/1‑148 (MQ=255)
    cTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTg                                                                                                                                                >  3:70691/1‑147 (MQ=255)
      gCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGTGCGGTGCCCAGTTGaaa                                                                                                                                             >  4:56884/1‑148 (MQ=255)
         cGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCt                                                                                                                                          >  3:99333/1‑148 (MQ=255)
           aTACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGAcc                                                                                                                                                     <  7:196099/135‑1 (MQ=255)
           aTACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGAcc                                                                                                                                                     >  8:196099/1‑135 (MQ=255)
              cccGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCgaga                                                                                                                                     <  4:125059/148‑1 (MQ=255)
              cccGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCgaga                                                                                                                                     <  4:313894/148‑1 (MQ=255)
                cGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGAt                                                                                                                                    >  6:242848/1‑147 (MQ=255)
                 ggCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGTGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGGTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATg                                                                                                                                   <  5:90284/147‑1 (MQ=255)
                    aGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTc                                                                                                                                <  5:187064/147‑1 (MQ=255)
                     ggCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGAcc                                                                                                                                                     <  4:292898/125‑1 (MQ=255)
                     ggCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGAcc                                                                                                                                                     >  3:292898/1‑125 (MQ=255)
                                gCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCtga                                                                                                                   <  1:313155/148‑1 (MQ=255)
                                    cGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTgatgat                                                                                                               >  3:32534/1‑148 (MQ=255)
                                     gAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTgatgat                                                                                                               <  4:47551/147‑1 (MQ=255)
                                             ggCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAgg                                                                                                       <  1:10886/147‑1 (MQ=255)
                                               ccGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGggt                                                                                                    >  3:177341/1‑148 (MQ=255)
                                                cGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGggtg                                                                                                   >  3:124207/1‑148 (MQ=255)
                                                  ttttCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGggtgcg                                                                                                 >  3:140422/1‑148 (MQ=255)
                                                    ttCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCGTCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGggtgcgg                                                                                                >  5:103887/1‑147 (MQ=255)
                                                       cATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCa                                                                                            <  4:70691/148‑1 (MQ=255)
                                                            cTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGa                                                                                      <  1:157216/148‑1 (MQ=255)
                                                             ttGCCACGGTGTGGGTACAGTAGCGCCCCGCTACCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACCCCTTGGGCGGTGACAAGTTCCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTg                                                                                       >  7:62497/1‑146 (MQ=255)
                                                                  aCGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGTCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAAt                                                                                >  1:250344/1‑148 (MQ=255)
                                                                  aCGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACAGAGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGc                                                                                   >  1:262923/1‑147 (MQ=255)
                                                                            tACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGc                                                                             <  5:97146/141‑1 (MQ=255)
                                                                            tACAGTAGCGCCCCGCTCCCCTCTCAAACCCACATGCACTCGTCTCGCATCGACGGGTTGCTCGATTACAAGATGAAACCTCCAGATGTTCTGCACGCAGCTGATGATCAGATAGTGGTGCGATGCAACTCAAGAAATCGc                                                                             >  6:97146/1‑141 (MQ=255)
                                                                             aCAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCa                                                                      <  6:279661/147‑1 (MQ=255)
                                                                              cAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCag                                                                     <  4:99333/147‑1 (MQ=255)
                                                                                 tAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGACGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGATGCAgaga                                                                  >  7:207194/1‑147 (MQ=255)
                                                                                    cgcCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACCTGAAGCAATCGCAGGTGCAGAGATCa                                                               <  1:19713/148‑1 (MQ=255)
                                                                                    cgcCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATc                                                                <  6:31001/146‑1 (MQ=255)
                                                                                     gcCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCACGTGCAGAGATCAgg                                                             <  4:140422/148‑1 (MQ=255)
                                                                                        ccGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGc                                                          >  2:72293/1‑148 (MQ=255)
                                                                                              cccTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCct                                                    >  3:76154/1‑148 (MQ=255)
                                                                                               ccTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCctt                                                   <  2:157718/148‑1 (MQ=255)
                                                                                                ctctCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCcttc                                                  <  1:72293/148‑1 (MQ=255)
                                                                                                     aaCCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCag                                             <  4:124207/148‑1 (MQ=255)
                                                                                                      aCCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGTGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCATTCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCag                                             <  5:281629/147‑1 (MQ=255)
                                                                                                        cGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGc                                          >  4:104345/1‑148 (MQ=255)
                                                                                                            ccTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAg                                      >  3:432/1‑148 (MQ=255)
                                                                                                              tGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCACTCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGc                                    >  3:258243/1‑148 (MQ=255)
                                                                                                                cACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCg                                   >  4:271727/1‑147 (MQ=255)
                                                                                                                    cGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCAGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAAc                               >  5:140977/1‑147 (MQ=255)
                                                                                                                       cgggCATCGACGGGTTGGGCGGTGACAAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGGAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCa                           <  4:69139/146‑1 (MQ=255)
                                                                                                                       cTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTGGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCa                           <  3:56884/148‑1 (MQ=255)
                                                                                                                          gCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGt                        <  1:21741/148‑1 (MQ=255)
                                                                                                                                   gggTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCt                     <  2:1758/143‑1 (MQ=255)
                                                                                                                                   gggTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCt                     >  1:1758/1‑143 (MQ=255)
                                                                                                                                     ggTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGgcg               <  3:104345/148‑1 (MQ=255)
                                                                                                                                       ttGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGgcgc              >  5:139151/1‑147 (MQ=255)
                                                                                                                                            cGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGTCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGcccc       >  4:318606/1‑148 (MQ=255)
                                                                                                                                                  ccAGTTGCAACCTCGAGACGTTCTGCACGCAGCTGATGATCCGGTAGGGGTGCGGTGAAACTGAAGCAATCGCAGATGCAGAGATCATGAGCCCGCCTTCTTCAGAGCGGAGGCGAAAACTCAAGTCCTCGGGCGCCCGCCCCGtctc  <  8:207194/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
TGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTTGCAACCTCGAGATGTTCTGCACGCAGCTGATGATCAGGTAGGGGTGCGGTGCAACTGAAGCAATCGCAGGTGCAGAGATCAGGAGCCCGCCTTCTTCAGAGCGGAGGCGAAACCTCAAGTCCTCGGGCGCCCGCCCCGTCTC  >  NC_002947/4601384‑4601675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.