| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 3 (0.050) | 50 (0.890) +GCC |
44/276 | 0.3 | 94.5% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 3 (0.050) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
CGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CG‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCA > NC_002947/5555461‑5555750 | cGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTTTAGCGAAAGGGCCGCATA‑g‑cg > 7:302776/1‑148 (MQ=255) cTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgc > 3:317853‑M1/1‑146 (MQ=255) aCTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccg < 2:256233‑M1/147‑7 (MQ=255) gCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGCAAGGGCCGCATT‑G‑CCgccccggcaaa > 1:237849‑M1/1‑137 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTAGCGCAAGGGCCGCCTA‑G‑CGgccccgggaattt > 7:283985‑M1/1‑135 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccg < 8:52399‑M1/148‑17 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccg < 3:95179‑M1/148‑17 (MQ=255) aaaTTCGGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgc > 7:146706‑M1/1‑131 (MQ=255) aaaTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgc > 2:21042‑M1/1‑131 (MQ=255) aaaTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgc > 8:84322‑M1/1‑131 (MQ=255) ttCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGGCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtg < 8:144524‑M1/148‑21 (MQ=255) tCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtg > 3:279381‑M1/1‑127 (MQ=255) aGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGTGCCGCATA‑G‑CGgccccggcaatttccgcgtgtat < 2:47492‑M1/148‑24 (MQ=255) ggTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatg > 8:140909‑M1/1‑124 (MQ=255) cGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgca < 5:235722‑M1/147‑27 (MQ=255) cAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctgg < 4:317853‑M1/148‑37 (MQ=255) gATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggct < 7:140909‑M1/148‑41 (MQ=255) gggCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgc < 4:279381‑M1/147‑48 (MQ=255) cGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTGCCGAAACGGCCGCATAGG‑GGgccccggcatttgcgcgtggatgcaacaaaacaggggctgcgatgcacgc > 4:33654‑M1/1‑98 (MQ=255) cGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcc > 3:251233‑M1/1‑97 (MQ=255) aCAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccct < 6:316694‑M1/147‑54 (MQ=255) aGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAATGGCCGCATA‑G‑CGgccccctcaatttccgcgggtaagcaaaaaacctggggctgcaaatcagccaattcgc > 7:98269‑M1/1‑89 (MQ=255) gCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcga < 1:21042‑M1/148‑61 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTTTAGCGAAAGGGCCGCCTA‑G‑CGGCCCCGGGCATTTTCGCGGGTTTGGGACAAACCAGGGGCTGGTATGCACCCCgttagggc > 3:211562/1‑142 (MQ=255) aCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcg > 8:167081‑M1/1‑85 (MQ=255) aCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcg < 7:167081‑M1/142‑58 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTTTAGCGAAAGGGCCGCATA‑G‑CGgccccgggaatttccgcgtgtatgcaacaaaccaggggctgctattcagcccattcgcgacac > 3:78861‑M1/1‑83 (MQ=255) ccTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaaaaaacctggggctgctatgcagccctttcgcgaaacaa > 6:164177‑M1/1‑82 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaa < 3:33654‑M1/148‑76 (MQ=255) cGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCATGGTGTCCCCCAAGGGCCGCAAA‑G‑GGGGCCCGGCAATTTGCGGGTGTTTGCAAAAAACCTGGGGGGGGAGTTCGCCCATATCGCCGCACAAGGCCCCCAAAGGGcc > 2:253292/1‑148 (MQ=255) cGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccg > 7:67150‑M1/1‑67 (MQ=255) cGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTAGCGAAAGGGCCGCAAA‑G‑CGgccccggccaattacgcgggtatggaacaaaacaggggctgctatgcagcccgttagcgacacaaagcccacaaaggcccccgc > 8:6306‑M1/1‑64 (MQ=255) gCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggct > 3:87392‑M1/1‑59 (MQ=255) cAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTAGCGCAAGGGCCCCATA‑GCCGCC‑CCGGGAAATTACGCGTGTATGCAACAAAACAGGGGGAGCGATTCACCCCATTCGCGGCACCAGGCCCCCAAAGGACCGCGCCCGCGTCAGGc > 8:77899/1‑148 (MQ=255) aagaccgcTCTGGTGTGGGAGCGGCG‑TTGTGTCGCTAAAGGGCCGCATA‑G‑CGgccccggcaatttccacgtgtatgcaacaaacctggggctgctatgcagcccttgcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcc < 3:153861‑M1/145‑97 (MQ=255) cacCGCTCAGGTGTGGGAGCGGCC‑TTGTGGCGCGAACGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccg < 4:46051‑M1/148‑99 (MQ=255) cTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaac < 5:152150‑M1/147‑103 (MQ=255) aGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggc < 8:302776‑M1/148‑107 (MQ=255) gcagcGGCC‑TTGTGCCGCGAACGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggct < 7:269109‑M1/146‑114 (MQ=255) ggCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgcgatgcagcccgttagcgacacaaggcccacaaaggaccgcgccggcatccggccccgaactggcccaggctggcgc > 4:48811‑M1/1‑30 (MQ=255) c‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgca < 4:211562‑M1/148‑122 (MQ=255) gtgtCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagc < 4:78861‑M1/147‑124 (MQ=255) gtgtCGCGAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagc < 8:146706‑M1/147‑124 (MQ=255) tCGCTAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctga < 3:153996‑M1/147‑127 (MQ=255) tCGCGAAAGGGCCGCATA‑G‑CGgcccaggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctga < 8:98269‑M1/147‑127 (MQ=255) gcgAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagc < 7:6306‑M1/147‑129 (MQ=255) cgAAAGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccg < 7:77899‑M1/148‑131 (MQ=255) aaaGGGCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggccc > 5:223696‑M1/1‑16 (MQ=255) ggCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagat < 2:243765‑M1/148‑137 (MQ=255) gCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccaca > 8:148327‑M1/1‑11 (MQ=255) gCCGCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccaca < 7:148327‑M1/84‑74 (MQ=255) gCATA‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatc < 7:84322‑M1/148‑141 (MQ=255) g‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagca < 7:67250‑M1/148‑146 (MQ=255) ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccag > 4:37716‑M1/1‑1 (MQ=255) ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccag < 3:37716‑M1/111‑111 (MQ=255) | CGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACAT‑GAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCC‑TTGTGTCGCGAAAGGGCCGCATA‑G‑CG‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCA > NC_002947/5555461‑5555750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |