New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 82053	51 (0.980)	5 (0.100)	4/256	NT	9.8%	intergenic (+30/+98)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
	?	NC_002947	= 82132	43 (0.860)					intergenic (+109/+19)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase

GCCGTGGCATGTTCTGGTCGAACCTGCATGCGATTGAGATGGCAGAGGGTGTGATCGAGGCGATACTCGATGGCATCGAGTCGACGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/81905‑82053 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACTGAGTCGGCCTCGATAGCAGCGCTATGCCTTGGAGGCTGGGCGTGACGGCGATGGCGTC  <  NC_002947/82132‑81987                                                                                                                                                                                                                                                                                                         GCCGTGGCATGTTCTGGTCGAACCTGCATGCGATTGAGATGGCAGAGGGTGTGATCGAGGCGATACTCGATGGCATCGAGTCGACGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGT                                                                                                                                                    <  8:122371/149‑1                  TCGAACCTGCATGCGATTGAGATGGCAGAGGGTGTGATCGAGGCGATACTCGATGGCATCGAGTCGACGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTAGGAGCGGGTTTACCCG                                                                                                                                   >  7:282224/1‑149                                                                              GAGTCGACGCCATCGCCGTCACGCCCAGCCTCCAAGGCATACCGCTGCGATCGAGGCCGACTCAGCACCTGTAGGAGCGGGTTTCCCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCGTTGCCGGTGTTCGCGGGCACGCCCGCg                                                                        <  3:180547/148‑2                                                                                    ACGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCAGGTGTTCGCGGGCACGCCCGCTCCCACAG                                                                 >  2:186283/1‑149                                                                                      GCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGT                                                               <  8:282224/149‑1                                                                                         ATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACT                                                            <  1:186283/149‑1                                                                                                                                                  CTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACTGAGTCGGCCTCGATAGCAGCGCTATGCCTTGGAGGCTGGGCGTGACGGCGATGGCGT   >  3:230241/1‑149                                                                                                                                                  CTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACTGAGTCGGCCTCGATAGCAGCGCTATGCCTTGGAGGCTGGGCGTGACGGCGATGGCGT   <  3:312525/149‑1                                                                                                                                                  CTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACTGAGTCGGCCTCGATAGCAGCGCTATGCCTTGGAGGCTGGGCGTGACGGCGATGGCGT   <  7:23679/149‑1                                                                                                                                                     TAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACTGAGTCGGCCTCGATAGCAGCGCTATGCCTTGGAGGCTGGGCGTGACGGCGATGGCGTC  <  3:279375/147‑1                                                                                                                                                                                                                                                                                                         GCCGTGGCATGTTCTGGTCGAACCTGCATGCGATTGAGATGGCAGAGGGTGTGATCGAGGCGATACTCGATGGCATCGAGTCGACGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/81905‑82053 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACTGAGTCGGCCTCGATAGCAGCGCTATGCCTTGGAGGCTGGGCGTGACGGCGATGGCGTC  <  NC_002947/82132‑81987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.