New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 82053	51 (0.980)	5 (0.100)	4/256	NT	9.8%	intergenic (+30/+98)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
	?	NC_002947	= 82132	43 (0.860)					intergenic (+109/+19)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase

GACGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACTGCCAATCATCG  >  NC_002947/81987‑82275                                                                                                                                                   |                                                                                                                                                gACGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTa                                                                                                                                                <  3:279375‑M2/147‑2 (MQ=255)  aCGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTacag                                                                                                                                             <  7:23679‑M2/149‑5 (MQ=255)  aCGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTacag                                                                                                                                             <  3:312525‑M2/149‑5 (MQ=255)  aCGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTacag                                                                                                                                             >  3:230241‑M2/1‑145 (MQ=255)    gCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAggg                                                                                                                                           <  7:74066/149‑1 (MQ=255)    gCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAggg                                                                                                                                           <  3:251407/149‑1 (MQ=255)       aTCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAAt                                                                                                                                        <  6:330880/149‑1 (MQ=255)            cGTCACGCCCAGCCTCCAAGTCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAAtgtgtg                                                                                                                                   <  8:301054/149‑1 (MQ=255)             gTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAAtgtgtgt                                                                                                                                  <  7:81445/149‑1 (MQ=255)                  gCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCt                                                                                                                              >  3:167628/1‑148 (MQ=255)                    ccAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCaa                                                                                                                           <  4:167628/149‑1 (MQ=255)                     cAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAg                                                                                                                          >  2:286610/1‑149 (MQ=255)                          tCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAAtgt                                                                                                                                      >  4:268386/1‑132 (MQ=255)                            cAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATc                                                                                                                     <  3:194585/147‑1 (MQ=255)                            cAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCa                                                                                                                    <  4:279375/148‑1 (MQ=255)                                  aTAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAAt                                                                                                                      >  7:17668/1‑140 (MQ=255)                                  aTAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAAt                                                                                                                      <  8:17668/140‑1 (MQ=255)                                         tgctATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGAccc                                                                                                       >  2:107999/1‑148 (MQ=255)                                                 aGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCt                                                                                              <  8:206678/149‑1 (MQ=255)                                                       aCTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTc                                                                                                <  5:98738/141‑1 (MQ=255)                                                       aCTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTc                                                                                                >  6:98738/1‑141 (MQ=255)                                                        cTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGcc                                                                                       <  8:23679/149‑1 (MQ=255)                                                           aGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTacaggtactgagtcggcctcgatagcagcgctatgccttggaggctgggcgtgacggcgat                                                                                    <  1:186283‑M2/149‑62 (MQ=255)                                                             tACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACaa                                                                                  <  6:69365/149‑1 (MQ=255)                                                              aCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTacaggtactgagtcggcctcgatagcagcgctatgccttggaggctgggcgtgacggcgatggc                                                                                 <  8:282224‑M2/149‑65 (MQ=255)                                                               ccTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACt                                                                                <  4:312525/149‑1 (MQ=255)                                                                cTGTGGGAGCGGGCGTGCCCGCGAACACCTGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTacaggtactgagtcggcctcgatagcagcgctatgccttggaggctgggcgtgacggcgatggcgt                                                                               >  2:186283‑M2/1‑83 (MQ=255)                                                                  gtgGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCg                                                                             >  7:196129/1‑149 (MQ=255)                                                                   tgGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTCATTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCg                                                                             >  1:93044/1‑149 (MQ=255)                                                                     ggAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCt                                                                          >  4:295245/1‑149 (MQ=255)                                                                     ggAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCt                                                                          >  3:182516/1‑149 (MQ=255)                                                                       cgcGGGCGTGCCCGCGAACACCGGCAACGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGGAAACCCGCTCCTacaggtgctgagtcggcctcgatcgcagcggtatgccttggaggctgggcgtgacggcgatggcgtcgactc                                                                         <  3:180547‑M2/147‑73 (MQ=255)                                                                          gggCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGcc                                                                     >  5:263433/1‑149 (MQ=255)                                                                            gCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCtt                                                                   >  5:71285/1‑149 (MQ=255)                                                                               tGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGgc                                                                <  4:272198/149‑1 (MQ=255)                                                                                            cGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGc                                                   <  3:70296/149‑1 (MQ=255)                                                                                                        tGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCgctgc                                       <  2:93044/149‑1 (MQ=255)                                                                                                          ccatccatCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGctgctg                                     >  6:285184/1‑149 (MQ=255)                                                                                                           catccatcGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTgg                                    <  5:285184/149‑1 (MQ=255)                                                                                                            atccatcGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACACAGCGGATACCGCTGCAgg                                    >  8:49736/1‑148 (MQ=255)                                                                                                             tccatcGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGCCAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGat                                  >  6:315203/1‑149 (MQ=255)                                                                                                             tccatcGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGa                                   >  1:144157/1‑148 (MQ=255)                                                                                                               catcGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGATCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGatat                                >  7:117458/1‑149 (MQ=255)                                                                                                                   gcgGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCca                             <  5:155677/148‑1 (MQ=255)                                                                                                                      gTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCAcagc                         <  6:263433/149‑1 (MQ=255)                                                                                                                      gTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGAAACCGCTGCTGGATATCCAcagc                         <  7:49736/149‑1 (MQ=255)                                                                                                                         gCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCAcagccag                      <  1:286610/149‑1 (MQ=255)                                                                                                                          cttc‑ttCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCAcagccagc                     <  2:3260/149‑1 (MQ=255)                                                                                                                                  gcgGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCAc              >  7:60042/1‑149 (MQ=255)                                                                                                                                   cgGGTAAACCCGCTCCTacaggtactgagtcggcctcgatagcagcgctatgccttggaggctgggcgtgacggcgatggcgtcgactcgatgccatcgagtatcgcctcgatcacaccctctgccatctcaatcgcatgcaggttcga             >  7:282224‑M2/1‑17 (MQ=255)                                                                                                                                    gggTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACTg            <  4:182516/149‑1 (MQ=255)                                                                                                                                    gggTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACTg            <  8:60042/149‑1 (MQ=255)                                                                                                                                      gTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACTGc           >  6:278720/1‑148 (MQ=255)                                                                                                                                           cccGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACTGCCAatca     <  6:71285/149‑1 (MQ=255)                                                                                                                                              gCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACTGCCAATCATCg  >  1:86221/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                GACGCCATCGCCGTCACGCCCAGCCTCCAAGGCATAGCGCTGCTATCGAGGCCGACTCAGTACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATCCATCGCGGTGGCTTC‑TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACTGCCAATCATCG  >  NC_002947/81987‑82275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.