New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 457748	62 (1.190)	3 (0.060)	3/252	NT	5.5%	coding (3/1131 nt)	pqqE	coenzyme PQQ synthesis protein E
	?	NC_002947	= 457782	44 (0.890)					coding (246/276 nt)	pqqD‑I	coenzyme PQQ synthesis protein D

TTCAGCCATGACCTTGAACCACTGTTCGGTGCTCAGCTCCTGGCCCTGGGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/457595‑457748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtggcCCGTGCCGAACACTGGATCGTCCTCGCCTGAGTTGCCACCTAC  <  NC_002947/457782‑457740                                                                                                                                                                                                       TTCAGCCATGACCTTGAACCACTGTTCGGTGCTCAGCTCCTGGACCTGGGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAG                                                  >  6:239720/1‑149      CCATGACCTTGAACCACTGTTCGGTGCTCAGCTCCTGGCCCTGGGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCCGGCCGACCTCGGGCGTAGGTGG                                              >  2:106266/1‑148      CCATGACCTTGAACCACTGTTCGGTGCTCAGCTCCTGGCCCTGGGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGG                                              >  4:174674/1‑148                                                 GGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCCCGTGCCGAACACTGGATCGTCCTCGCCTGAGTTGCCACCTA   <  5:239720/148‑1                                                                  GGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCCCGTGCCGAACACTGGATCGTCCTCGCCTGAGTTGCCACCTAC  >  7:67046/1‑132                                                                  GGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCCCGTGCCGAACACTGGATCGTCCTCGCCTGAGTTGCCACCTAC  <  8:67046/132‑1                                                                                                                                                                                                       TTCAGCCATGACCTTGAACCACTGTTCGGTGCTCAGCTCCTGGCCCTGGGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/457595‑457748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtggcCCGTGCCGAACACTGGATCGTCCTCGCCTGAGTTGCCACCTAC  <  NC_002947/457782‑457740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.