New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 457748	62 (1.190)	3 (0.060)	3/252	NT	5.5%	coding (3/1131 nt)	pqqE	coenzyme PQQ synthesis protein E
	?	NC_002947	= 457782	44 (0.890)					coding (246/276 nt)	pqqD‑I	coenzyme PQQ synthesis protein D

CTGGCCCTGGGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATCAGGCTCGCGCTGTCGTTGAGCTTGAT  >  NC_002947/457634‑457925                                                                                                                                                     |                                                                                                                                                cTGGCCCTGGGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACgg                                                                                                                                                 <  7:34120/149‑1 (MQ=255) cTGGCCCTGGGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACgg                                                                                                                                                 <  2:201803/149‑1 (MQ=255) cTGGCCCTGGGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCCGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACgg                                                                                                                                                 <  6:306804/149‑1 (MQ=255)          ggcggcTAAGTCCAGTTGGTTGTATCAGTAAGGGCACTGCAGCGGGCAGCGGTTGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTGAGGCGATGACGATCCAGTGTTCGGCACGGGCCtcctcc                                                                                                                                        <  8:218841/149‑1 (MQ=255)             ggcAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCAt                                                                                                                                      >  5:247013/1‑148 (MQ=255)                aaaGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAAc                                                                                                                                  <  3:729/149‑1 (MQ=255)                 aaGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACt                                                                                                                                 >  3:54708/1‑149 (MQ=255)                     ccAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTc                                                                                                                             >  5:82104/1‑149 (MQ=255)                           ggTTGGAGCAGTAAGGGCACTGCAGCGGGCAGGGGTAGGTCAGCTCTGCCAGCAGCCTCAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATgtc                                                                                                                       <  6:193145/149‑1 (MQ=255)                            gTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATgtcg                                                                                                                      >  8:173603/1‑149 (MQ=255)                               ggAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATgtcgtc                                                                                                                    <  6:247013/148‑1 (MQ=255)                               ggAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATgtcgtc                                                                                                                    <  6:184813/148‑1 (MQ=255)                                gAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCg                                                                                                                  >  7:152603/1‑149 (MQ=255)                                 aGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGc                                                                                                                 >  1:321646/1‑149 (MQ=255)                                 aGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGc                                                                                                                 <  6:129061/149‑1 (MQ=255)                                     gTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACt                                                                                                             >  6:248920/1‑149 (MQ=255)                                         gggCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCAGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCg                                                                                                         <  2:34901/149‑1 (MQ=255)                                          ggCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCgg                                                                                                        <  4:175501/149‑1 (MQ=255)                                          cgCACTGCAGCGGGCAGCGGGACGTCAGCGCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCgg                                                                                                        <  6:221401/148‑1 (MQ=255)                                             aCTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGa                                                                                                      >  4:9354/1‑148 (MQ=255)                                               tGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGacac                                                                                                   >  8:61833/1‑149 (MQ=255)                                                   gcgggcagcggTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCggg                                                                                               <  4:54708/149‑1 (MQ=255)                                                   gcgggcagcggTAGGGCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCCAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCCGGACACCggg                                                                                               <  7:280944/149‑1 (MQ=255)                                                        cagcggTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCAGGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAAtt                                                                                          <  5:262817/149‑1 (MQ=255)                                                                ggTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTc                                                                                   <  6:82104/148‑1 (MQ=255)                                                                ggTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTc                                                                                   <  3:9354/148‑1 (MQ=255)                                                                 gTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGa                                                                                 <  2:321646/149‑1 (MQ=255)                                                                  tCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGa                                                                                 <  7:162273/148‑1 (MQ=255)                                                                          gCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGTtga                                                                        <  2:97983/149‑1 (MQ=255)                                                                             agcagcCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCtgatga                                                                     >  5:212116/1‑149 (MQ=255)                                                                                    acaGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGc                                                              >  6:141504/1‑149 (MQ=255)                                                                                          gCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGt                                                         >  8:93112/1‑148 (MQ=255)                                                                                                cGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTg                                                  <  2:45838/149‑1 (MQ=255)                                                                                                   ccTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGcc                                               <  3:90999/149‑1 (MQ=255)                                                                                                    cTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCg                                              >  2:325726/1‑149 (MQ=255)                                                                                                      cGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTc                                            >  2:243122/1‑149 (MQ=255)                                                                                                       gggCGTATGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTc                                            <  8:152603/148‑1 (MQ=255)                                                                                                       gggCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGt                                             <  7:61833/147‑1 (MQ=255)                                                                                                           gTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGgccacctacgcccgaggtcggcctgccgctgtggctgctggccgagctgacctaccgctgcccgctgcagtgcccttactgctccaacc                                                        <  8:67046‑M2/132‑90 (MQ=255)                                                                                                           gTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGgccacctacgcccgaggtcggcctgccgctgtggctgctggccgagctgacctaccgctgcccgctgcagtgcccttactgctccaacc                                                        >  7:67046‑M2/1‑43 (MQ=255)                                                                                                            tAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGgccacctacgcccgaggtcggcctgccgctgtggctgctggccgagctgacctaccgctgcccgctgcagtgcccttactgctccaacccactggactttgccgcc                                       <  5:239720‑M2/148‑107 (MQ=255)                                                                                                            tAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAg                                      <  7:5924/149‑1 (MQ=255)                                                                                                             aGGTGGAAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAgg                                     >  1:74851/1‑149 (MQ=255)                                                                                                              ggTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCCgg                                     <  7:93112/148‑1 (MQ=255)                                                                                                                  gCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCtgatga                                                                     <  1:45950/112‑1 (MQ=255)                                                                                                                  gCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCtgatga                                                                     >  2:45950/1‑112 (MQ=255)                                                                                                                     aCTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGAt                             >  3:30881/1‑149 (MQ=255)                                                                                                                      cTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATc                            <  2:136217/149‑1 (MQ=255)                                                                                                                      cTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATc                            <  6:212116/149‑1 (MQ=255)                                                                                                                                              cGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATCAGGCTCGCGCTGTCGTTGAGCtt     <  1:325726/148‑1 (MQ=255)                                                                                                                                              cGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATCAGGCTCGCGCTGTCGTTGAGCtt     <  4:30881/148‑1 (MQ=255)                                                                                                                                               ggCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGACGATCAGGCCACCGATCAGGCTCGCGCTGGCATTGAGCTTGa   >  4:184967/1‑149 (MQ=255)                                                                                                                                                 cACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATCAGGCTCGCGCTGTCGTTGAGCTTGAt  >  6:303813/1‑148 (MQ=255)                                                                                                                                                   cGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATCAGGCTCGCACTGTCGTTGAGCt      <  2:229839/142‑1 (MQ=255)                                                                                                                                                   cGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATCAGGCTCGCACTGTCGTTGAGCt      >  1:229839/1‑142 (MQ=255)                                                                                                                                                     ggCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATCAGGCTCGCGCTGt               <  6:293501/131‑1 (MQ=255)                                                                                                                                                     ggCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATCAGGCTCGCGCTGt               >  5:293501/1‑131 (MQ=255)                                                                                                                                                     |                                                                                                                                                CTGGCCCTGGGCGGCAAAGTCCAGTGGGTTGGAGCAGTAAGGGCACTGCAGCGGGCAGCGGTAGGTCAGCTCGGCCAGCAGCCACAGCGGCAGGCCGACCTCGGGCGTAGGTGGCAACTCAGGCGAGGACGATCCAGTGTTCGGCACGGGCCACCTCCATGAACTGCTCGATGTCGTCCGCCACTTCCGGGACACCGGGGAATTGCTGTTCGAGTTCGCTGATGATCGCTGCCACGTCACGCTGGCCGTCGATCAGGCCACCGATCAGGCTCGCGCTGTCGTTGAGCTTGAT  >  NC_002947/457634‑457925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.