New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1330937 =	NA (NA)	5 (0.100)	4/256	NT	NA	coding (162/1644 nt)	PP_1157	acetolactate synthase
	?	NC_002947	1330981 =	NA (NA)					coding (206/1644 nt)	PP_1157	acetolactate synthase

TTCTTGATCGGCTTCTGCCCGGTGATCATCATCATCGGCATGCCGCCCAGGTAGGCGTAGGCGCTGGCGGTCACCAGGTTGGTGGCACCAGGGCCGAGGGTCGACAGGCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1331086‑1330937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATCAAGAAGTCCAAGCAGGGTCGCTTCCAGATCATTGACGTGTGCGGCAT  >  NC_002947/1330981‑1331128                                                                                                                                                                                                                                                                                                                 TTCTTGATCGGCTTCTGCCCGGTGATCATCATCATCGGCATGCCGCCCAGGTAGGCGTAGGCGCTGGCGGTCACCAGGTTGGTGGCACCAGGGCCGAGGGTCGACAGGCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGC                                                                                                                                                           >  5:184724/1‑149 TTCTTGATCGGCTTCTGCCCGGTGATCATCATCATCGGCATGCCGCCCAGGTAGGCGTAGGCGCTGGCGGTCACCAGGTTGGTGGCACCAGGGCCGAGGGTCGACAGGCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGC                                                                                                                                                           >  4:104793/1‑149 TTCTTGATCGGCTTCTGCCCGGTGATCATCATCATCGGCATGCCGCCCAGGTAGGCGTAGGCGCTGGCGGTCACCAGGTTGGTGGCACCAGGGCCGAGGGTCGACAGGCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGC                                                                                                                                                           >  1:69385/1‑149   CTTGATCGGCTTCTGCCCGGTGATCATCATCATCGGCATGCCGCCCAGGTAGGCGTAGGCGCTGGCGGTCACCAGGTTGGTGGCACCAGGGCCGAGGGTCGACAGGCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGCC                                                                                                                                                          <  2:44490/148‑1   CTTGATCGGCTTCTGCCCGGTGATCATCATCATCGGCATGCCGCCCAGGTAGGCGTAGGCGCTGGCGGTCACCAGGTTGGTGGCACCAGGGCCGAGGGTCGACAGGCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGC                                                                                                                                                           <  6:256751/147‑1                                                                                                       tACAGGCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGCCTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATC                                                 <  2:204137/148‑1                                                                                                         CAGGCTGACGCCGGTCTTGCCGGTCAGGCGACGCGTAGGTGGCAGCCTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATC                                                 >  1:204137/1‑148                                                                                                         CAGGCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGCCTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATC                                                 >  1:154364/1‑147                                                                                                          AGGCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGCCTGTCGACCCTCGGCACCATGGTGCAACCAACATGGTGACCGCCAGCGCCTCCGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGAgc                                                 >  1:256898/1‑146                                                                                                            GCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGCCTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATCAAG                                              >  1:27172/1‑147                                                                                                                                                  GCAGCCTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATCAAGAAGTCCAAGCAGGGTCGCTTCCAGATCATTGACGTGTGC       <  2:154364/149‑1                                                                                                                                                    AGCCTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATCAAGAAGTCCAAGCAGGGTCGCTTCCAGATCATTGACGTGTGCGG     >  2:212322/1‑149                                                                                                                                                    AGCCTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATCAAGAAGTCCAAGCAGGGTCGCTTCCAGATCATTGACGTGTGCGG     <  8:249518/149‑1                                                                                                                                                     GCCTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATGCTCTGATCACCGGGCAGAAGCCGATCAAGAAGTCCAAGCAGGGTCGCTTCCAGATCATTGACGTGTGCG      <  1:97297/149‑1                                                                                                                                                     GCCTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATCAAGAAGTCCAAGCAGGGTCGCTTCCAGATCATTGACGTGTGCGGC    <  2:263902/149‑1                                                                                                                                                     GCCTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATCAAGAAGTCCAAGCAGGGTCGCTTCCAGATCATTGACGTGTGCGG     >  4:158417/1‑148                                                                                                                                                       CTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATCAAGAAGTCCAAGCTGGGTCGCTTCCAGATCATTGACGTGTGCGGCAT  <  1:44490/149‑1                                                                                                                                                                                                                                                                                                                 TTCTTGATCGGCTTCTGCCCGGTGATCATCATCATCGGCATGCCGCCCAGGTAGGCGTAGGCGCTGGCGGTCACCAGGTTGGTGGCACCAGGGCCGAGGGTCGACAGGCTGACGCCGGTCTTGCCGGTCAGGCGAC‑CGTAGGTGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1331086‑1330937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccTGTCGACCCTCGGC‑CC‑TGGTGCCACCAACCTGGTGACCGCCAGCGCCTACGCCTACCTGGGCGGCATGCCGATGATG‑‑ATGATCACCGGGCAGAAGCCGATCAAGAAGTCCAAGCAGGGTCGCTTCCAGATCATTGACGTGTGCGGCAT  >  NC_002947/1330981‑1331128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.