New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1591654	58 (1.110)	3 (0.060)	3/256	NT	5.2%	coding (240/921 nt)	PP_1395	AraC family transcriptional regulator
	?	NC_002947	= 1591667	53 (1.060)					coding (227/921 nt)	PP_1395	AraC family transcriptional regulator

TTGGGTACCAGCATTGGCCCGCTCTCGGCGATCAGTTGGCTGATCTCCGCCGGGTCCAGGTCCATGCGCAGGCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1591502‑1591654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagtACGCCTACGACCCACTGCATTACATGGTCGTTTCGGTGACCTTGCCACTCAGCGCCGTGAGGCTGGATGCCAGCCCCGAGAACCCAAGCCTGGGCCTGCGCATGGACCTGGACCCGGCGGA  <  NC_002947/1591667‑1591547                                                                                                                                                                                                                                                                                    TTGGGTACCAGCATTGGCCCGCTCTCGGCGATCAGTTGGCTGATCTCCGCCGGGTCCAGGTCCATGCGCAGGCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATG                                                                                                                               <  7:143463/149‑1                         TCGGCGATCAGTTGGCTGATCTCCGCCGGGTCCAGGTCCATGCGCAGGCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATG                                                                                                                               <  1:303190/125‑1                         TCGGCGATCAGTTGGCTGATCTCCGCCGGGTCCAGGTCCATGCGCAGGCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATG                                                                                                                               >  2:303190/1‑125                                        CTGATCTCCGCCGGGTCCAGGTCCATGCGCAGGCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTACGCCTACGACCCACTGCATTACATGGTCGTTTCG                                                                                        <  1:55386/149‑1                                                                                TTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTACGCCTACGACCCACTGCATTAC                                                                                                    >  5:158987/1‑97                                                                                TTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTACGCCTACGACCCACTGCATTAC                                                                                                    <  6:158987/97‑1                                                                                                                                                         TACGCCTACGACCCACTGCATTACATGGTCGTTTCGGTGACCTTGCCACTCAGCGCCGTGAGGCTGGATGCCAGCCCCGAGAACCCAAGCCTGGGCCTGCGCATGGACCTGGACCCGGCGGA  >  3:202412/1‑122                                                                                                                                                         TACGCCTACGACCCACTGCATTACATGGTCGTTTCGGTGACCTTGCCACTCAGCGCCGTGAGGCTGGATGCCAGCCCCGAGAACCCAAGCCTGGGCCTGCGCATGGACCTGGACCCGGCGGA  <  4:202412/122‑1                                                                                                                                                                                                                                                                                    TTGGGTACCAGCATTGGCCCGCTCTCGGCGATCAGTTGGCTGATCTCCGCCGGGTCCAGGTCCATGCGCAGGCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1591502‑1591654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagtACGCCTACGACCCACTGCATTACATGGTCGTTTCGGTGACCTTGCCACTCAGCGCCGTGAGGCTGGATGCCAGCCCCGAGAACCCAAGCCTGGGCCTGCGCATGGACCTGGACCCGGCGGA  <  NC_002947/1591667‑1591547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.