New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1635694	51 (0.980)	4 (0.090)	4/232	NT	8.6%	intergenic (+40/‑130)	era/recO	GTPase Era/DNA repair protein RecO
	?	NC_002947	= 1635764	41 (0.900)					intergenic (+110/‑60)	era/recO	GTPase Era/DNA repair protein RecO

GCGCAAGGACATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1635534‑1635694 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccttgtgtcgcgaAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCAGCGAACGCAGGGCGC  <  NC_002947/1635764‑1635620                                                                                                                                                                                                                                                                                                                    GCGCAAGGACATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGC                                                                                                                                                               >  2:295474/1‑149     AAGGACATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGT‑AAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTTCGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGT                                                                                                                                                          <  2:255216/149‑1          CATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCG                                                                                                                                                      >  4:176156/1‑149                     TGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGAAAAGGGCC                                                                                                                                           >  6:141162/1‑149                                AAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTT                                                                                                                                                            >  3:32006/1‑121                                AAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTT                                                                                                                                                            >  3:35951/1‑121                                AAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTT                                                                                                                                                            <  4:32006/121‑1                                AAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTT                                                                                                                                                            <  4:35951/121‑1                                                                            CGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCG                                                                                     >  4:275129/1‑148                                                                                               CGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAG                                                                 <  3:275129/149‑1                                                                                               CGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAA                                                                  <  5:141162/148‑1                                                                                                                                                    GCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCA                                              >  3:266638/1‑115                                                                                                                                                    GCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCA                                              <  4:266638/115‑1                                                                                                                                                              GCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGGAGCATAAATCGCCGGGGCGGCTGCGTAGCCCTCTCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCCGGGCACGCAGGGCGC  >  3:11607/1‑149                                                                                                                                                                                                                                                                                                                    GCGCAAGGACATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1635534‑1635694 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccttgtgtcgcgaAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCAGCGAACGCAGGGCGC  <  NC_002947/1635764‑1635620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.