New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1635694	51 (0.980)	4 (0.090)	4/232	NT	8.6%	intergenic (+40/‑130)	era/recO	GTPase Era/DNA repair protein RecO
	?	NC_002947	= 1635764	41 (0.900)					intergenic (+110/‑60)	era/recO	GTPase Era/DNA repair protein RecO

GCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCTGGTGGACTTTTTCACCCCG  >  NC_002947/1635620‑1635910                                                                                                                                                 |                                                                                                                                                   gcgcCCTGCGTGCCCGGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGAGAGGGCTACGCAGCCGCCCCGGCGATTTATGCTCCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTtcgc                                                                                                                                                >  3:11607‑M2/1‑145 (MQ=255)     ccTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCATTTTTCGCCAAAAGGCTAACCACCACCCCCCCCGATTTTTTCTGCGAATCTAAAAAAAATGGGCCGCTTTTGGGCCCgtttaggccc                                                                                                                                             >  4:21058/1‑142 (MQ=255)                tGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTc                                                                                                                                 >  7:36167/1‑149 (MQ=255)                  ggCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTcc                                                                                                                                <  3:176156/148‑1 (MQ=255)                  gccgaccgCGACCCGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTc                                                                                                                                 <  8:241487/140‑1 (MQ=255)                    cTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGGGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCcac                                                                                                                             <  3:21058/149‑1 (MQ=255)                     tACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCcac                                                                                                                             >  6:61753/1‑148 (MQ=255)                       cGGCGACCTGCAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCCGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAg                                                                                                                          <  8:247528/149‑1 (MQ=255)                          cGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGc                                                                                                                       >  1:123146/1‑149 (MQ=255)                                    gCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAAcc                                                                                                             >  6:260605/1‑149 (MQ=255)                                    gCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAAcc                                                                                                             <  3:61815/149‑1 (MQ=255)                                    gCCGCGCGCTGGGCCCTGTAGGGGCGGCCTTGGGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCCAAGCTAAAAAACTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAAcc                                                                                                             <  5:194860/149‑1 (MQ=255)                                             tGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTtcgcgacacaaggc                                                                                                                                      >  3:266638‑M2/1‑101 (MQ=255)                                             tGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTtcgcgacacaaggc                                                                                                                                      <  4:266638‑M2/115‑15 (MQ=255)                                              ggTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGa                                                                                                   <  3:68386/149‑1 (MQ=255)                                               gTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCTACACAAGGCCGCTCCCACAAGGGCCAGTGCACCCCTCGTCGCGAg                                                                                                  >  6:300438/1‑149 (MQ=255)                                                    tGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCCGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCGTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGAtt                                                                                             >  1:126884/1‑149 (MQ=255)                                                       aGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGAtttt                                                                                           <  6:100856/148‑1 (MQ=255)                                                         gggCGGCGTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCTATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTaa                                                                                        <  2:126884/149‑1 (MQ=255)                                                          ggcggcCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAAt                                                                                       <  8:36167/149‑1 (MQ=255)                                                           gcggcCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATg                                                                                      <  2:223696/149‑1 (MQ=255)                                                               ccTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGaa                                                                                   >  7:239210/1‑148 (MQ=255)                                                                cTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTtcgcgacacaaggccgcccctacagggaccagcgcgcggcttacaggtcgccgtagcccagcgaacg                                                                                 <  3:275129‑M2/149‑68 (MQ=255)                                                                 ttGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTtcgcgacacaaggccgcccctacagggaccagcgcgcggcttacaggtcgccgtagcccagcgaacg                                                                                 <  5:141162‑M2/148‑68 (MQ=255)                                                                   gtgtCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGaacaac                                                                               <  2:123146/148‑1 (MQ=255)                                                                   gtgaCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGaacaa                                                                                <  6:179039/147‑1 (MQ=255)                                                                      tCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCt                                                                                                           <  7:304275/117‑1 (MQ=255)                                                                      tCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGt                                                                           >  1:142399/1‑149 (MQ=255)                                                                        gcgATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCg                                                                         <  5:260605/149‑1 (MQ=255)                                                                        gcgATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCATCGGCGCGACTGATTTTTAATGGAACAACCTGTCg                                                                         >  6:321072/1‑149 (MQ=255)                                                                                 cTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTcagccag                                                                >  2:110740/1‑149 (MQ=255)                                                                                    cGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTtcgcgacacaaggccgcccctacagggaccagcgcgcggcttacaggtcgccgtagcccagcgaacgcagggcgcgctcgtcgtcg                                                              >  4:275129‑M2/1‑62 (MQ=255)                                                                                            ccccGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTg                                                     >  3:214309/1‑149 (MQ=255)                                                                                             cccGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTg                                                     >  7:142925/1‑148 (MQ=255)                                                                                             cccGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTg                                                     >  1:68523/1‑148 (MQ=255)                                                                                                     tttATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCTACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGt                                            <  5:314407/149‑1 (MQ=255)                                                                                                             gcGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTAc                                      >  3:166085/1‑147 (MQ=255)                                                                                                             gcGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACaa                                    <  8:239210/149‑1 (MQ=255)                                                                                                                   cTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAAc                              <  3:135897/149‑1 (MQ=255)                                                                                                                    tAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGc                                                                                                                       >  3:267836/1‑59 (MQ=255)                                                                                                                    tAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGc                                                                                                                       <  4:267836/59‑1 (MQ=255)                                                                                                                    tAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAAc                              >  2:59522/1‑148 (MQ=255)                                                                                                                     aaaaaTCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGt                                            >  6:191222/1‑133 (MQ=255)                                                                                                                     aaaaaTCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGt                                            <  5:191222/133‑1 (MQ=255)                                                                                                                     aaaaaTCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAAc                              >  1:208223/1‑147 (MQ=255)                                                                                                                              gggCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCtg                    <  5:271874/148‑1 (MQ=255)                                                                                                                               ggCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCtggt                  >  8:127283/1‑149 (MQ=255)                                                                                                                               ggCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCtggt                  >  8:131457/1‑149 (MQ=255)                                                                                                                                     tttGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCTGGTGGACtt            >  5:101850/1‑149 (MQ=255)                                                                                                                                       tGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCTGGTGGACtt            <  1:59522/147‑1 (MQ=255)                                                                                                                                          ggCCCTTTtcgcgacacaaggccgcccctacagggaccagcgcgcggcttacaggtcgccgtagcccagcgaacgcagggcgcgctcgtcgtcggaccagccgccctttaccttgacccacaggttgagcatgaccttggaatcgaaca       >  6:141162‑M2/1‑8 (MQ=255)                                                                                                                                            cccTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCTGGTGGACTTTTTCAcc     >  1:153697/1‑149 (MQ=255)                                                                                                                                             acTTATCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTATAAATGGAACAACCTGTCCGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCTGGTGGACTTTTTCAccc    <  5:300438/148‑1 (MQ=255)                                                                                                                                              cTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCTGGTGGACTTTTTCAcccc   >  2:187413/1‑149 (MQ=255)                                                                                                                                                 ttCGCGACACAAGGCCGCTCCCACAAGGGCCAGTTCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCTGGTGGACTTTTTCACCCCg  <  1:110740/147‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   GCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGATAGGGCTACGCAGCAGCCCCGGCGATTTATGCTGCGAAGCTAAAAATCTGGGGCCGCTTTGCGGCCCTTTTCGCGACACAAGGCCGCTCCCACAAGGGCCAGTGCAACCCTCGGCGCGAGTGATTTTTAATGGAACAACCTGTCGGTCAGCCAGCCTACGTACTGCACAGCCGTGCCTACAAGGAAACCAGCGCGCTGGTGGACTTTTTCACCCCG  >  NC_002947/1635620‑1635910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.