New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1717676	52 (1.000)	4 (0.080)	4/252	NT	7.3%	coding (375/777 nt)	rsmJ	ribosomal RNA small subunit methyltransferase J
	?	NC_002947	= 1717706	52 (1.050)					coding (405/777 nt)	rsmJ	ribosomal RNA small subunit methyltransferase J

CCAGTTTGGCGGTGGCAACGGGCAGATGATCGCCAAGGCTGTGGGCATTGCCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1717523‑1717676 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagGCCGTCCTCCAGCAGCGCGGCAATCAGCGGCTGGCGCT  <  NC_002947/1717706‑1717669                                                                                                                                                                                                  CCAGTTTGGCGGTGGCAACGGGCAGATGATCGCCAAGGCTGTGGGCATTGCCCAAGGTATCCGGTCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGC                                             >  6:103598/1‑149 CCAGTTTGGCGGTGGCAACGGGCAGATGATCGCCAAGGCTGTGGGCATTGCCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGC                                             >  5:51503/1‑149   AGTTTGGCGGTGGCAACGGGCAGATGATCGCCAAGGCTGTGGGCATTGCCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGC                                           <  2:205148/149‑1   AGTTTGGCGGTGGCAACGGGCAGATGATCGCCAAGGCTGTGGGCATTGCCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGC                                           <  5:152450/149‑1                                                   CCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGGCCGTCCTCCAGCAGCGCGGCAATCAGCGGCTGGCGCT  >  7:108941/1‑142                                                   CCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGGCCGTCCTCCAGCAGCGCGGCAATCAGCGGCTGGCGCT  <  8:108941/142‑1                                                    CCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGGCCGTCCTCCAGCAGCGCGGCAATCAGCGGCTGGCGC   >  3:270603/1‑140                                                    CCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAGGCCGTCCTCCAGCAGCGCGGCAATCAGCGGCTGGCGC   <  4:270603/140‑1                                                                                                                                                                                                  CCAGTTTGGCGGTGGCAACGGGCAGATGATCGCCAAGGCTGTGGGCATTGCCCAAGGTATCCGGCCGCAGGTACTGGATGCCACGGCGGGGCTGGGCAAGGACGCGTTCGTGCTGGCCAGCCTTGGCTGCCAGATGACCCTGATCGAGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1717523‑1717676 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagGCCGTCCTCCAGCAGCGCGGCAATCAGCGGCTGGCGCT  <  NC_002947/1717706‑1717669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.