| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1821476 | NA (NA) | 11 (0.220) | 5/252 | NT | NA | coding (1239/1422 nt) | PP_1624 | group II intron‑encoding maturase |
| ? | NC_002947 | = 2070847 | NA (NA) | coding (1221/1422 nt) | PP_1846 | group II intron‑encoding maturase | |||||
TCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCCCACGAGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1821325‑1821476‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggctgCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTT < NC_002947/2070847‑2070701 TCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAATCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCCCACGAG < 8:203973/148‑1TCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCCCACTAGG < 7:250667/149‑1 ATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCCCACGAGGCT < 7:43768/149‑1 ATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCCCACGAGGCT > 6:324657/1‑149 ATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCCCACGAGGC < 6:24167/148‑1 TCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCCCACGAGGCT > 4:254930/1‑148 ACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCCCACGAGG > 3:116996/1‑134 ACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCCCACGAGG < 4:116996/134‑1 GCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCGTGGGAGGCTGTTTCCATTGACGC > 8:127757/1‑116 GCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCGTGGGAGGCTGTTTCCATTGACGC < 7:127757/116‑1 TGGAAACAGCCTCCCACGAGGCTGTTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTC < 6:88626/81‑1 TGGAAACAGCCTCCCACGAGGCTGTTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTC > 5:88626/1‑81 GAAGCAGCCTCCCACGAGGCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGC > 6:25314/1‑149 aagCAGCCTCCCACGAGGCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCA < 3:211385/128‑1 aagCAGCCTCCCACGAGGCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCA > 4:211385/4‑131 ACAGCCTCCCACGAGGCTGTTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTC > 1:70186/1‑148 CAGCCTCCCACGAGGCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGA > 3:87465/1‑149 GCCTCCCACGAGGCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGA > 4:239547/1‑147 GCCTCCCACGAGGCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGA < 3:239547/147‑1 AGGCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCA < 3:1253/149‑1 AGGCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCA < 3:108714/149‑1 AGGCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTT < 2:291685/78‑1 AGGCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTT > 1:291685/1‑78 gtCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCAT < 5:261115/147‑1 GCTGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATT > 7:283028/1‑149 GCTGCTTCCATTGACGACAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCAAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTAGAAGTAGCTAGCCCAGCCTCTCAGGCCGGGCTTGATCCGCTCGATGACAGTCGCCATT > 8:156352/1‑149 TGCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTT > 6:231275/1‑149 TCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAACAGCCTCCCACGAGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1821325‑1821476‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggctgCTTCCATTGACGCCAGATGACGCAGCGGAGTTTGTGCCTGACCCAACCATCCAGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTT < NC_002947/2070847‑2070701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |