New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1821476	NA (NA)	11 (0.220)	5/252	NT	NA	coding (1239/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2070847	NA (NA)					coding (1221/1422 nt)	PP_1846	group II intron‑encoding maturase

TGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGAC  >  NC_002947/2070738‑2070991                                                                                                              |                                                                                                                                                 tGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTgggg                                                                                                           >  4:228473/1‑149 (MQ=32)     agGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGa                                                                                                       <  6:167988/149‑1 (MQ=32)                     ttCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCca                                                                                        >  4:106183/1‑148 (MQ=32)                         aGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTg                                                                                                              >  1:267031/1‑122 (MQ=11)                         aGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTg                                                                                                              <  2:267031/122‑1 (MQ=11)                          gCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGt                                                                                  >  5:103459/1‑149 (MQ=32)                           cTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGt                                                                                  >  8:256331/1‑148 (MQ=32)                            tCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGt                                                                                  >  3:137110/1‑147 (MQ=32)                              aGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCa                                                                                <  2:33925/147‑1 (MQ=32)                                ccAGAGCAAGCGGACGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGAGTCATCTGGCGTCAATGGAAGCAGCCTACCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCt                                                                            >  1:121339/1‑149 (MQ=12)                                   gagCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTc                                                                          >  7:51419/1‑148 (MQ=32)                                           ggCCGCTTGAGGAACTGGATGGGTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGa                                                                 <  1:316878/149‑1 (MQ=17)                                            gCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAg                                                                <  6:103459/149‑1 (MQ=32)                                               gCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTc                                                             >  2:217156/1‑149 (MQ=32)                                                    aGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTGCAtgg                                                        >  8:218429/1‑149 (MQ=17)                                                      gaccTGGATCGCTGGGGCCGACACACACACCGCTGCGTCATCTGGCGTCAATGGAAGCACCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCAtggtg                                                      <  4:54473/146‑1 (MQ=11)                                                      gAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCAtggtg                                                      >  4:40433/1‑149 (MQ=32)                                                            gATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTc                                                <  5:52228/149‑1 (MQ=32)                                                             aTGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCg                                               <  7:256331/149‑1 (MQ=32)                                                              tGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCgg                                              <  3:106183/149‑1 (MQ=32)                                                                gTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGa                                            <  3:228473/149‑1 (MQ=32)                                                                 ttGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAg                                           >  6:204108/1‑149 (MQ=32)                                                                    ggTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCcaac                                                                                      >  5:322103/1‑103 (MQ=32)                                                                    ggTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCcaac                                                                                      <  6:322103/103‑1 (MQ=32)                                                                          gCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACata                                  >  5:107984/1‑149 (MQ=32)                                                                          gCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCAGAGGTCCATGGTGGAATTCGGGAGCGCAACata                                  >  8:13499/1‑149 (MQ=17)                                                                            acaAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACatat                                 >  2:300488/1‑148 (MQ=32)                                                                              aaaCTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGaa                              <  4:137110/149‑1 (MQ=32)                                                                                 cTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGACTTCGGGAGCGCAACATATGAACTa                           >  5:84366/1‑149 (MQ=17)                                                                                  tCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTAc                          >  3:49278/1‑149 (MQ=32)                                                                                               ccccagTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCaaa               <  1:279227/142‑1 (MQ=17)                                                                                                  gCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGaaa           <  3:40433/148‑1 (MQ=32)                                                                                                     tCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGTAACATATGAACTACGCGCTGCCAAAGAAACtgt       >  7:43513/1‑149 (MQ=17)                                                                                                        aTGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTgg     >  5:35383/1‑148 (MQ=32)                                                                                                           gAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGAc  <  6:107984/148‑1 (MQ=32)                                                                                                              |                                                                                                                                                 TGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACTCCGCTGCGTCATCTGGCGTCAATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGAC  >  NC_002947/2070738‑2070991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.