| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2614423 = | 54 (1.040) | 3 (0.060) | 3/252 | NT | 5.9% | coding (3362/4710 nt) | PP_2287 | internal core protein |
| ? | NC_002947 | 2614489 = | 44 (0.890) | coding (3428/4710 nt) | PP_2287 | internal core protein | |||||
CCCCGCCCATGAGGCGGATGACGTTGAAGTTCCGCCACATTTCCAGGCTCTTGTTGAGCGTGGAGAACTCCTCCATCGGGAGGCCCTGGATGCGGTCGAAGGCGAACTTCAAGTCCTTTCGCATACCGGCCAAGTTCGCGCCTGGGCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2614575‑2614423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatccAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGAAGGC > NC_002947/2614489‑2614633 CCCCGCCCATGAGGCGGATGACGTTGAAGTTCCGCCACATTTCCAGGCTCTTGTTGAGCGTGGAGAACTCCTCCATCGGGAGGCCCTGGATGCGGTCGAAGGCGAACTTCAAGTCCTTTCGCATACCGGCCAAGTTCGCGCCTGGGCG > 2:132006/1‑148 CCGCCCATGAGGCGGATGACGTTGAAGTTCCGCCACATTTCCAGGCTCTTGTTGAGCGTGGAGAACTCCTCCATCGGGAGGCCCTGGATGCGGTCGAAGGCGAACTTCAAGTCCTTTCGCATACCGGCCAAGTTCGCGCCTGGGCGCAT > 4:260607/1‑149 CGCCCATGAGGCGGATGACGTTGAAGTTCCGCCACATTTCCAGGCTCTTGTTGAGCGTGGAGAACTCCTCCATCGGGAGGCCCTGGATGCGGTCGAAGGCGAACTTCAAGTCCTTTCGCATACCGGCCAAGTTCGCGCCTGGGCGCATC < 4:69511/149‑1 CCTGGATGCGGTCGAAGGCGAACTTCAAGTCCTTTCGCATACCGGCCAAGTTCGCGCCTGGGCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATG > 2:138762/1‑149 CTGGATGCGGTCGAAGGCGAACTTCAAGTCCTTTCGCATACCGGCCAAGTTCGCGCCTGGGCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGG > 4:189103/1‑149 ACTTCAAGTCCTTTCGCATACCGGCCAAGTTCGCGCCTGGGCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAA < 3:189103/149‑1 CGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGAA < 5:185398/149‑1 CGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGAA < 8:264262/149‑1 CATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGAAGG > 8:289325/1‑149 ATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGAAGGC < 7:237192/149‑1 ATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCA < 2:217799/82‑1 CCCCGCCCATGAGGCGGATGACGTTGAAGTTCCGCCACATTTCCAGGCTCTTGTTGAGCGTGGAGAACTCCTCCATCGGGAGGCCCTGGATGCGGTCGAAGGCGAACTTCAAGTCCTTTCGCATACCGGCCAAGTTCGCGCCTGGGCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2614575‑2614423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatccAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGAAGGC > NC_002947/2614489‑2614633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |