New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2614423 =	54 (1.040)	3 (0.060)	3/252	NT	5.9%	coding (3362/4710 nt)	PP_2287	internal core protein
	?	NC_002947	2614489 =	44 (0.890)					coding (3428/4710 nt)	PP_2287	internal core protein

TTGCAAAGCACCTGGACGTGTACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGAAGGC  >  NC_002947/2614342‑2614633                                                                                                                                                    |                                                                                                                                                  ttGCAAAGCACCTGGACGTGTACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAg                                                                                                                                                  >  8:225077/1‑149 (MQ=255) ccatgaggcggatgacgttgaagttccgccacatttccaggctcttgttgagcgtggagaactcctccatcgggaggccctGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAg                                                                                                                                                  >  4:189103‑M1/82‑149 (MQ=255)  catgaggcggatgacgttgaagttccgccacatttccaggctcttgttgagcgtggagaactcctccatcgggaggccctGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAgg                                                                                                                                                 >  2:138762‑M1/81‑149 (MQ=255)     aaaGCACCTGGACGTGTACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGcc                                                                                                                                              >  6:192578/1‑149 (MQ=255)     aaaGCACCTGGACGTGTACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGcc                                                                                                                                              >  4:143617/1‑149 (MQ=255)     aaaGCACCTGGACGTGTACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGcc                                                                                                                                              >  1:43801/1‑149 (MQ=255)         cACCTGGACGTGTACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTTGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTccc                                                                                                                                          <  4:174827/149‑1 (MQ=255)           ccTGGACGTGTACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGa                                                                                                                                        >  8:212133/1‑149 (MQ=255)               gACGTGTACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATgga                                                                                                                                    <  1:96330/149‑1 (MQ=255)                aCGTGTACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATggag                                                                                                                                   <  3:187742/149‑1 (MQ=255)                  gtgtACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATggagga                                                                                                                                 <  4:80079/149‑1 (MQ=255)                  gtgtACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATggagga                                                                                                                                 <  3:143617/149‑1 (MQ=255)                  gtgtACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATggag                                                                                                                                   >  7:126755/1‑147 (MQ=255)                         aGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTcc                                                                                                                          <  5:179305/149‑1 (MQ=255)                          ggggCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCa                                                                                                                         >  1:200221/1‑149 (MQ=255)                           gggCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCAc                                                                                                                        >  1:132006/1‑149 (MQ=255)                            ggCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACg                                                                                                                       <  5:192578/149‑1 (MQ=255)                                 gACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTcaa                                                                                                                  <  8:126755/149‑1 (MQ=255)                                    aTCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTcaac                                                                                                                 >  2:203950/1‑147 (MQ=255)                                       gAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑agag                                                                                                           >  7:201053/1‑149 (MQ=255)                                            ggCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTg                                                                                                       >  8:104665/1‑148 (MQ=255)                                                   atGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAAtgtg                                                                                               <  3:99375/149‑1 (MQ=255)                                                   atGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAAtgtg                                                                                               <  4:308610/149‑1 (MQ=255)                                                   atGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAAtgt                                                                                                <  4:97784/148‑1 (MQ=255)                                                    tGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTgg                                                                                              <  7:104665/149‑1 (MQ=255)                                                      gccgccACTGAGAACAAGTTCGGTGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACGTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGc                                                                                             <  6:120706/148‑1 (MQ=255)                                                           cACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACt                                                                                       >  4:214980/1‑149 (MQ=255)                                                                 gaACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAAc                                                                                  <  7:74489/148‑1 (MQ=255)                                                                  aaCAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAAcct                                                                                >  6:244470/1‑147 (MQ=255)                                                                      aGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGGCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATc                                                                            <  6:122907/149‑1 (MQ=255)                                                                        ttCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCg                                                                          >  6:60447/1‑149 (MQ=255)                                                                             ggAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCa                                                                     >  7:264262/1‑149 (MQ=255)                                                                               cctggatgcggtcgaaggcgaacttcaagtcctttcgcataccggccaagttcgcgcctgggcgcatccAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATg                                                                   >  2:138762‑M2/70‑149 (MQ=255)                                                                                ctggatgcggtcgaaggcgaacttcaagtcctttcgcataccggccaagttcgcgcctgggcgcatccAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATgg                                                                  >  4:189103‑M2/69‑149 (MQ=255)                                                                                   GATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATgggcg                                                               <  4:69511‑M1/149‑1 (MQ=255)                                                                                    ATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATgggcgg                                                              >  4:260607‑M1/1‑149 (MQ=255)                                                                                       CGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATgggcgggg                                                            >  2:132006‑M1/1‑148 (MQ=255)                                                                                              gcgcGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATgg                                                    <  8:201053/149‑1 (MQ=255)                                                                                              ccccgAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTAt                                                      <  8:112037/144‑1 (MQ=255)                                                                                               cgcgAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATgg                                                    >  6:185398/1‑148 (MQ=255)                                                                                                    acttcaagtcctttcgcataccggccaagttcgcgcctgggcgcatccAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCaa                                              <  3:189103‑M2/101‑1 (MQ=255)                                                                                                      ttGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGt                                            >  3:135971/1‑149 (MQ=255)                                                                                                           cGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCg                                       <  2:200221/149‑1 (MQ=255)                                                                                                             gTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAg                                     >  8:195039/1‑149 (MQ=255)                                                                                                              tATGCGAAAGGACTTGAAGTTCGACTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGc                                    <  4:157327/149‑1 (MQ=255)                                                                                                                tGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTa                                  <  3:214980/149‑1 (MQ=255)                                                                                                                    aaaGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTTGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGc                              <  5:244470/149‑1 (MQ=255)                                                                                                                    aaaGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCg                               >  5:263478/1‑148 (MQ=255)                                                                                                                             gAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTg                     >  2:313488/1‑149 (MQ=255)                                                                                                                                 ttCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACAGAGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGt                  >  1:89263/1‑149 (MQ=255)                                                                                                                                    gCCTTCGACCGCATCCAGGGCCTCACGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGCGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCAt              >  2:268886/1‑149 (MQ=255)                                                                                                                                     ccTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATg             <  7:212133/149‑1 (MQ=255)                                                                                                                                      cTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATgg            >  6:123940/1‑149 (MQ=255)                                                                                                                                         cGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGAt         >  5:224453/1‑149 (MQ=255)                                                                                                                                           aCCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATg        >  8:237192/1‑148 (MQ=255)                                                                                                                                            ccGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAAtg                                                                                                 >  1:158522/1‑58 (MQ=255)                                                                                                                                            ccGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAAtg                                                                                                 <  2:158522/58‑1 (MQ=255)                                                                                                                                             cgcatccAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGaa     <  5:185398‑M2/142‑1 (MQ=255)                                                                                                                                             cgcatccAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGaa     <  8:264262‑M2/142‑1 (MQ=255)                                                                                                                                               catccAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGAAgg   >  8:289325‑M2/6‑149 (MQ=255)                                                                                                                                                atccAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCa                                                                     <  2:217799‑M2/78‑1 (MQ=255)                                                                                                                                                atccAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGAAGGc  <  7:237192‑M2/145‑1 (MQ=255)                                                                                                                                                    aGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATggg           >  4:168323/1‑136 (MQ=255)                                                                                                                                                    aGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATggg           <  3:168323/136‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TTGCAAAGCACCTGGACGTGTACAAGGGGCAGGACATCGAAAAGGCCATCATGGCCGCCACTGAGAACAAGTTCGGGGAAGGGATGCGCCCAGGCGCGAACTTGGCCGGTATGCGAAAGGACTTGAAGTTCGCCTTCGACCGCATCCAGGGCCTCCCGATGGAGGAGTTCTCCACGCTCAACA‑AGAGCCTGGAAATGTGGCGGAACTTCAACGTCATCCGCCTCATGGGCGGGGCGGTATGGAACCAAGTCTCCGAGCTATCGCAGATCACTGGGTCCATGGGATGGAAGGC  >  NC_002947/2614342‑2614633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.