| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2647129 = | 51 (0.980) | 3 (0.060) | 3/248 | NT | 6.8% | coding (185/2499 nt) | PP_2316 | ABC transporter permease |
| ? | NC_002947 | 2647187 = | 35 (0.720) | coding (127/2499 nt) | PP_2316 | ABC transporter permease | |||||
ACTGCGCCAGTTGCTGCGCGATGTTCGCGCCAGTGAAGTGCGCGTGCTGTTCTTTGCCCTGTTGGTGGCGGTAGCTGCCAGCACCGCCATCGGCTATTTCGGCGCCCGCCTAAACGGCGCCATGCAGCTGCGCGCCAGCGAGTTTCTGGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2647284‑2647129‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgccgaAATAGCCGATGGCGGTGCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGCATACGGCTCACCGGGCCTCCA > NC_002947/2647187‑2647332 ACTGCGCCAGTTGCTGCGCGATGTTCGCGCCAGTGAAGTGCGCGTGCTGTTCTTTGCCCTGTTGGTGGCGGTAGCTGCCAGCACCGCCATCGGCTATTTCGGCGCCCGCCTAAACGGCGCCATGCAGCTGCGCGCCAGCGAGTTTCTGG < 8:252385/149‑1ACTGCGCCAGTTGCTGCGCGATGTTCGCGCCAGTGAAGTGCGCGTGCTGTTCTTTGCCCTGTTGGTGGCGGTAGCTGCCAGCACCGCCATCGGCTATTTCGGCGCCCGCCTAAACGGCGCCATGCAGCTGCGCGCCAGCGAGTTTCTGG < 8:54579/149‑1 TGCGCCAGTTGCTGCGCGATGTTCGCGCCAGTGAAGTGCGCGTGCTGTTCTTTGCCCTGTTGGTGGCGGTAGCTGCCAGCACCGCCATCGGCTATTTCGGCGCCCGCCTAAACGGCGCCATGCAGCTGCGCGCCAGCGAGTTTCTGGGC > 7:209749/1‑149 CCAGTTGCTGCGCGATGTTCGCGCCAGTGAAGTGCGCGTGCTGTTCTTTGCCCTGTTGGTGGCGGTAGCTGCCAGCACCGCCATCGGCTATTTCGGCGCCCGCCTAAACGGCGCCATGCAGTTGCGCGCCAGCGAGTTTCTGGGCGCC > 3:12747/1‑148 ATTTCGGCGCCCGCCTAAACGGCGCCATGCAGCTGCGCGCCAGCGAGTTTCTGGGCGCCGAAATAGCCGATGGCGGTGCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAAC > 1:259055/1‑137 ATTTCGGCGCCCGCCTAAACGGCGCCATGCAGCTGCGCGCCAGCGAGTTTCTGGGCGCCGAAATAGCCGATGGCGGTGCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAAC < 2:259055/137‑1 CGGCGCCCGCCTAAACGGCGCCATGCAGCTGCGCGCCAGCGAGTTTCTGGGCGCCGAAATAGCCGATGGCGGTGCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGG > 4:150201/1‑149 CCGAAATAGCCGATGGCGGTGCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGCATACGGCTCACCGGGCCTC > 2:283810/1‑148 CGAAATAGCCGATGGCGGTGCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGCATACGGCTCACCGGGCCTCCA > 6:166275/1‑149 ACTGCGCCAGTTGCTGCGCGATGTTCGCGCCAGTGAAGTGCGCGTGCTGTTCTTTGCCCTGTTGGTGGCGGTAGCTGCCAGCACCGCCATCGGCTATTTCGGCGCCCGCCTAAACGGCGCCATGCAGCTGCGCGCCAGCGAGTTTCTGGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2647284‑2647129‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgccgaAATAGCCGATGGCGGTGCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGCATACGGCTCACCGGGCCTCCA > NC_002947/2647187‑2647332 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |