New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2647129 =	51 (0.980)	3 (0.060)	3/248	NT	6.8%	coding (185/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	2647187 =	35 (0.720)					coding (127/2499 nt)	PP_2316	ABC transporter permease

AACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGCATACGGCTCACCGGGCCTCCA  >  NC_002947/2647039‑2647332                                                                                                                                                     |                                                                                                                                                   aaCTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGaa                                                                                                                                                    <  1:72362/149‑1 (MQ=255)    tCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCAGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGAACGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGATTAGGCGGGCGCCGAAATa                                                                                                                                                 >  1:82456/1‑149 (MQ=255)      gACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGc                                                                                                                                               <  1:32168/149‑1 (MQ=255)        ccACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCg                                                                                                                                             <  5:15759/149‑1 (MQ=255)              gTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCg                                                                                                                                       <  7:101527/149‑1 (MQ=255)              gTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCg                                                                                                                                       >  5:291884/1‑149 (MQ=255)               gttcgcgccagtgaagtgcgcgtgctgttctttgccctgttggtggcggtagctgccagcaccgccatcggctattTCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAAt                                                                                                                                                  >  1:259055‑M1/77‑137 (MQ=255)               gttcgcgccagtgaagtgcgcgtgctgttctttgccctgttggtggcggtagctgccagcaccgccatcggctattTCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAAt                                                                                                                                                  <  2:259055‑M1/61‑1 (MQ=255)                 cATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCgg                                                                                                                                      >  1:247577/1‑147 (MQ=255)                     gcgcAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTgg                                                                                                                               <  6:312025/149‑1 (MQ=255)                       gcAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTgg                                                                                                                               >  5:75098/1‑147 (MQ=255)                             ccAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCACAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTAcc                                                                                                                       >  4:247040/1‑149 (MQ=255)                               aGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGc                                                                                                                     <  2:220093/149‑1 (MQ=255)                                   ccTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGccac                                                                                                                  >  1:164542/1‑148 (MQ=255)                                   ccTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGccac                                                                                                                  >  4:307866/1‑148 (MQ=255)                                       gCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGTAGCTGCCAGC‑ACCGccatcgg                                                                                                               <  2:247577/147‑5 (MQ=255)                                          ggCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCACAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAggg                                                                                                          <  3:247040/149‑1 (MQ=255)                                                 aGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGaa                                                                                                   >  5:146278/1‑149 (MQ=255)                                                 aGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGaa                                                                                                   <  2:321205/149‑1 (MQ=255)                                                 aGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGaa                                                                                                   <  2:164542/149‑1 (MQ=255)                                                     gTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAACTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGc                                                                                               >  4:12747/1‑149 (MQ=255)                                                         cTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCAcgc                                                                                           >  6:289252/1‑149 (MQ=255)                                                                gCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTc                                                                                    <  3:97526/149‑1 (MQ=255)                                                                 ccGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCa                                                                                   >  8:104693/1‑149 (MQ=255)                                                                      gcgcTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACCGCACGCGCACTTCACTGgc                                                                              >  7:93953/1‑149 (MQ=255)                                                                      gcgcTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGgc                                                                              >  2:286743/1‑149 (MQ=255)                                                                        gcTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGgcgc                                                                            <  5:245637/149‑1 (MQ=255)                                                                                  aGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATcgcg                                                                  <  7:104693/149‑1 (MQ=255)                                                                                   gTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCgcgc                                                                 <  2:82456/149‑1 (MQ=255)                                                                                    tACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCgca                                                                <  6:146278/149‑1 (MQ=255)                                                                                    tACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCgca                                                                <  2:157657/149‑1 (MQ=255)                                                                                        atttcggcgcccgcctaaacggcgccatgcagctgcgcgccagcgagtttctgggcgccgaAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAAc                                                                        <  2:259055‑M2/76‑1 (MQ=255)                                                                                        atttcggcgcccgcctaaacggcgccatgcagctgcgcgccagcgagtttctgggcgccgaAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAAc                                                                        >  1:259055‑M2/62‑137 (MQ=255)                                                                                            cggcgcccgcctaaacggcgccatgcagctgcgcgccagcgagtttctgggcgccgaAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTgg                                                        >  4:150201‑M2/58‑149 (MQ=255)                                                                                             GGCGCCCAGAAACTCGCTGGCGCGCAACTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTgg                                                        >  3:12747‑M1/1‑148 (MQ=255)                                                                                                GCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCa                                                    >  7:209749‑M1/1‑149 (MQ=255)                                                                                                  CCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGt                                                  <  8:252385‑M1/149‑1 (MQ=255)                                                                                                  CCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGt                                                  <  8:54579‑M1/149‑1 (MQ=255)                                                                                                       aaCTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAg                                             <  8:258811/149‑1 (MQ=255)                                                                                                          tCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGc                                           >  6:35263/1‑148 (MQ=255)                                                                                                             cTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCcaca                                       <  7:252385/149‑1 (MQ=255)                                                                                                                         tGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAg                           >  8:88388/1‑149 (MQ=255)                                                                                                                             tGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCgg                        >  8:248962/1‑148 (MQ=255)                                                                                                                             tGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGc                       <  5:35263/149‑1 (MQ=255)                                                                                                                                cgcCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGCATa                    >  6:65760/1‑149 (MQ=255)                                                                                                                                   cGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGCATACgg                 <  6:291884/149‑1 (MQ=255)                                                                                                                                                 ccgaAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGCATACGGCTCACCGGGCCTc    >  2:283810‑M2/5‑148 (MQ=255)                                                                                                                                                  cgaAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGCATACGGCTCACCGGGCCTCCa  >  6:166275‑M2/4‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AACTCGACCACGCGTGCATGGCGCAAGCCCAGTGCCTTGCCGGCATCGAGCTGTTGCTCGCGGGCCGGCGCGCTGCCCTGCAGTACCAGATCGGCGCCCAGAAACTCGCTGGCGCGCAGCTGCATGGCGCCGTTTAGGCGGGCGCCGAAATAGCCGATGGCGGT‑GCTGGCAGCTACCGCCACCAACAGGGCAAAGAACAGCACGCGCACTTCACTGGCGCGAACATCGCGCAGCAACTGGCGCAGTGCCAGGCCACACAGGCGGGATAGCGGCATACGGCTCACCGGGCCTCCA  >  NC_002947/2647039‑2647332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.