New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3052482	52 (1.000)	3 (0.060)	3/254	NT	5.7%	coding (1182/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3052535	49 (0.990)					coding (1235/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator

CATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3052396‑3052482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgcACGCCACCGCGCAGGCGCCGACACCCCAGCACCACGCGCCCGCTGGGGGTGTAGCGGATAGCATTGCTGAGCAGGTTGCGCAGGATGCGTGCCAGCAGCTGGATGTCACTGCGCACGACGGCAGAACACCCCACAAAATGCAGCTCT  <  NC_002947/3052535‑3052389                                                                                                                                                                                                                                            CATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCACGCCACCGCGCAGGCGCCGACACCCCAGCACCACGCGCCCGCTGGGGGTGTAGCGGATA                                                                                         <  5:311567/147‑1   TTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGAAATGCTATCCGCACGCCACCGCGCAGGCGACGACACCCCAGCACCACGAGCCCGCTGGGGGTGTAGCGGATAGCAT                                                                                     >  5:318585/1‑149             TGTTCTGCCGTAGTGCTCAGTGACATCCAGATGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGCACGCCACCGCGCAGGCGCCGACACCCCAGCACCACGCGCCCGCTGGGGGTGTAGCGGATAGCATTGCTGAGCAG                                                                           <  6:318585/149‑1                                                                                       CACGCCACCGCGCAGGCGCCGACACCCCAGCACCACGCGCCCGCTGGGGGTGTAGCGGATAGCATTGCTGAGCAGGTTGCGCAGGATGCGTGCCAGCAGCTGGATGTCACTGCGCACGACGGCAGAACACCCCACAAAATGCAGCTCT  >  2:5638/1‑148                                                                                                                                                                                                                                            CATTTTGTGGGGTGTTCTGCCGTCGTGCGCAGTGACATCCAGCTGCTGGCACGCATCCTGCGCAACCTGCTCAGCAATGCTATCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3052396‑3052482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgcACGCCACCGCGCAGGCGCCGACACCCCAGCACCACGCGCCCGCTGGGGGTGTAGCGGATAGCATTGCTGAGCAGGTTGCGCAGGATGCGTGCCAGCAGCTGGATGTCACTGCGCACGACGGCAGAACACCCCACAAAATGCAGCTCT  <  NC_002947/3052535‑3052389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.